SEED Subsystem: tRNA processing in Rhodanobacter denitrificans MT42

Experiments:

Role Gene Name R2A_PIPES with Cadmium chloride 64 uM  
⨯
5-carboxymethyl uridine and 5-carboxymethyl 2-thiouridine methyltransferase No genes
Ribonuclease BN (EC 3.1.-.-) LRK55_RS03490 +0.0
Ribonuclease D (EC 3.1.26.3) LRK55_RS15770 +0.5
Ribonuclease P protein component (EC 3.1.26.5) LRK55_RS08260 N.D.
Ribonuclease PH (EC 2.7.7.56) LRK55_RS11470 -0.4
Ribonuclease T (EC 3.1.13.-) LRK55_RS00190 -3.8
Ribonuclease Z (EC 3.1.26.11) No genes
tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) No genes
tRNA pseudouridine 13 synthase (EC 4.2.1.-) LRK55_RS16365 -0.1
tRNA pseudouridine 55 synthase (EC 4.2.1.70) No genes
tRNA pseudouridine synthase A (EC 4.2.1.70) LRK55_RS01480 -2.2
  LRK55_RS06765 +0.0
  LRK55_RS15640 +0.3
tRNA pseudouridine synthase B (EC 4.2.1.70) LRK55_RS00810 +0.2
tRNA(Ile)-lysidine synthetase No genes
tRNA-i(6)A37 methylthiotransferase LRK55_RS13465 -1.7
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) LRK55_RS18110 N.D.
tRNAHis-5'-guanylyltransferase No genes

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