SEED Subsystem: Photorespiration (oxidative C2 cycle) in Castellaniella sp019104865 MT123

Experiments:

Role Gene Name Anaerobic, pH5.5  
⨯
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) ABCV34_RS00925 -2.2
  ABCV34_RS12130 -0.0
2-oxoglutarate/malate translocator No genes
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) ABCV34_RS08845 +1.7
Catalase (EC 1.11.1.6) ABCV34_RS02155 +0.0
D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4) ABCV34_RS06820 -2.0
D-glycerate 3-kinase (EC 2.7.1.31), plant type No genes
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) ABCV34_RS04190 +0.3
Expressed protein possibly involved in photorespiration No genes
Glycerate kinase (EC 2.7.1.31) No genes
Glycine cleavage system H protein ABCV34_RS08840 +1.0
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) ABCV34_RS08835 +1.4
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE ABCV34_RS06810 -1.9
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF ABCV34_RS06805 -2.0
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD ABCV34_RS06815 -2.6
Glycolate oxidase (EC 1.1.3.15) No genes
Glycolate permease No genes
Glyoxylate carboligase (EC 4.1.1.47) ABCV34_RS12140 -0.0
Hydroxypyruvate reductase (EC 1.1.1.81) No genes
L-alanine:glyoxylate aminotransferase (EC 2.6.1.44) No genes
Malate synthase (EC 2.3.3.9) No genes
Malate synthase G (EC 2.3.3.9) ABCV34_RS12110 +0.2
Malyl-CoA lyase (EC 4.1.3.24) No genes
Phosphoglycolate phosphatase (EC 3.1.3.18) ABCV34_RS10275 -0.2
Ribulose bisphosphate carboxylase (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39) No genes
Ribulose-1,5-bisphosphate carboxylase, Type III (EC 4.1.1.39) No genes
Serine hydroxymethyltransferase (EC 2.1.2.1) ABCV34_RS06400 +0.2
  ABCV34_RS10555 -3.8
  ABCV34_RS13110 -0.2
Serine--glyoxylate aminotransferase (EC 2.6.1.45) No genes

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