SEED Subsystem: tRNA processing in Parabacteroides merdae CL09T00C40

Experiments:

Role Gene Name GAM 1 x (C)  
⨯
5-carboxymethyl uridine and 5-carboxymethyl 2-thiouridine methyltransferase No genes
Ribonuclease BN (EC 3.1.-.-) HMPREF1078_RS16410 -0.7
Ribonuclease D (EC 3.1.26.3) No genes
Ribonuclease P protein component (EC 3.1.26.5) HMPREF1078_RS06750 N.D.
Ribonuclease PH (EC 2.7.7.56) No genes
Ribonuclease T (EC 3.1.13.-) No genes
Ribonuclease Z (EC 3.1.26.11) HMPREF1078_RS04490 -0.3
  HMPREF1078_RS14470 -0.1
tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) No genes
tRNA pseudouridine 13 synthase (EC 4.2.1.-) No genes
tRNA pseudouridine 55 synthase (EC 4.2.1.70) No genes
tRNA pseudouridine synthase A (EC 4.2.1.70) HMPREF1078_RS16085 +0.7
tRNA pseudouridine synthase B (EC 4.2.1.70) HMPREF1078_RS17110 +1.6
tRNA(Ile)-lysidine synthetase No genes
tRNA-i(6)A37 methylthiotransferase HMPREF1078_RS17135 +0.2
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) HMPREF1078_RS04785 +1.5
tRNAHis-5'-guanylyltransferase No genes

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