SEED Subsystem: Peptidoglycan Biosynthesis in Pantoea sp. MT58

Experiments:

Role Gene Name Nickel (II) chloride 40 uM, aerobic  
⨯
Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129) IAI47_15960 N.D.
  IAI47_16905 +0.0
D-alanine--D-alanine ligase (EC 6.3.2.4) IAI47_02985 +0.1
  IAI47_15920 -0.1
D-alanine--D-alanine ligase A (EC 6.3.2.4) No genes
D-alanine--D-alanine ligase B (EC 6.3.2.4) No genes
D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) IAI47_07170 -0.1
  IAI47_13090 -0.1
  IAI47_14040 -1.1
  IAI47_17085 -0.0
  IAI47_21050 -0.0
Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) IAI47_00245 N.D.
Glutamate racemase (EC 5.1.1.3) IAI47_00960 N.D.
  IAI47_09975 +0.1
Glutamine synthetase type I (EC 6.3.1.2) IAI47_00460 -2.7
Glutamine synthetase type II, eukaryotic (EC 6.3.1.2) No genes
Glutamine synthetase type III, GlnN (EC 6.3.1.2) No genes
Glutamine synthetase, clostridia type (EC 6.3.1.2) No genes
Membrane-bound lytic murein transglycosylase B (EC 3.2.1.-) No genes
Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) IAI47_04275 -0.1
Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) IAI47_17210 -0.1
Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) IAI47_01860 -0.2
  IAI47_15615 +0.1
Murein-DD-endopeptidase (EC 3.4.99.-) IAI47_13395 -0.0
N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) IAI47_00245 N.D.
N-acetylglucosamine-1-phosphate uridyltransferase eukaryotic (EC 2.7.7.23) No genes
Penicillin-binding protein 2 (PBP-2) IAI47_03420 +0.0
  IAI47_14025 N.D.
Penicillin-binding protein 4 precursor No genes
Penicillin-binding protein PBP2a, methicillin resistance determinant MecA, transpeptidase No genes
Penicillin-insensitive transglycosylase (EC 2.4.2.-) & transpeptidase PBP-1C IAI47_05030 +0.1
Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) IAI47_15945 N.D.
Putative glutamine synthetase, Rickettsiales type (EC 6.3.1.2) No genes
Rare lipoprotein A precursor IAI47_14035 -0.7
Rod shape-determining protein RodA IAI47_14030 N.D.
UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) IAI47_18180 N.D.
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) IAI47_17115 N.D.
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) IAI47_15930 N.D.
UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) IAI47_15925 N.D.
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9) IAI47_15940 N.D.
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) IAI47_15955 N.D.
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10) IAI47_15950 N.D.

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