SEED Subsystem: Peptidoglycan Biosynthesis in Herbaspirillum seropedicae SmR1

Experiments:

Role Gene Name D,L-Lactate (C)  
⨯
Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129) HSERO_RS01635 N.D.
D-alanine--D-alanine ligase (EC 6.3.2.4) HSERO_RS01675 N.D.
D-alanine--D-alanine ligase A (EC 6.3.2.4) No genes
D-alanine--D-alanine ligase B (EC 6.3.2.4) No genes
D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) HSERO_RS16870 -0.2
  HSERO_RS21530 +0.5
Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) HSERO_RS22110 N.D.
Glutamate racemase (EC 5.1.1.3) HSERO_RS07755 -2.0
Glutamine synthetase type I (EC 6.3.1.2) HSERO_RS15690 N.D.
Glutamine synthetase type II, eukaryotic (EC 6.3.1.2) No genes
Glutamine synthetase type III, GlnN (EC 6.3.1.2) No genes
Glutamine synthetase, clostridia type (EC 6.3.1.2) No genes
Membrane-bound lytic murein transglycosylase B (EC 3.2.1.-) No genes
Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) HSERO_RS04945 +0.6
Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) HSERO_RS01995 +0.1
Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) HSERO_RS06975 -1.2
  HSERO_RS14725 -0.2
  HSERO_RS20890 N.D.
Murein-DD-endopeptidase (EC 3.4.99.-) HSERO_RS08175 -0.2
  HSERO_RS22495 -0.2
N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) HSERO_RS22110 N.D.
N-acetylglucosamine-1-phosphate uridyltransferase eukaryotic (EC 2.7.7.23) No genes
Penicillin-binding protein 2 (PBP-2) HSERO_RS23330 N.D.
Penicillin-binding protein 4 precursor No genes
Penicillin-binding protein PBP2a, methicillin resistance determinant MecA, transpeptidase No genes
Penicillin-insensitive transglycosylase (EC 2.4.2.-) & transpeptidase PBP-1C No genes
Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) HSERO_RS01650 N.D.
Putative glutamine synthetase, Rickettsiales type (EC 6.3.1.2) No genes
Rare lipoprotein A precursor HSERO_RS23340 +0.4
Rod shape-determining protein RodA HSERO_RS23335 N.D.
UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) HSERO_RS07170 N.D.
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) HSERO_RS20355 -3.5
  HSERO_RS22500 -0.1
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) HSERO_RS01665 N.D.
UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) HSERO_RS01670 N.D.
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9) HSERO_RS01655 N.D.
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) HSERO_RS01640 N.D.
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10) HSERO_RS01645 N.D.

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