SEED Subsystem: DNA-replication in Rhodanobacter denitrificans FW104-10B01

Experiments:

Role Gene Name R2A with Manganese (II) chloride tetrahydrate 2.5 mM  
⨯
ATP-dependent DNA helicase RecG (EC 3.6.1.-) LRK54_RS11805 -0.5
ATP-dependent DNA helicase RecQ LRK54_RS13000 -0.0
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA LRK54_RS08485 N.D.
  LRK54_RS12960 N.D.
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) LRK54_RS04915 N.D.
DNA polymerase I (EC 2.7.7.7) LRK54_RS03865 +0.0
  LRK54_RS06840 -0.2
DNA polymerase II (EC 2.7.7.7) No genes
DNA polymerase III alpha subunit (EC 2.7.7.7) LRK54_RS00235 -0.1
  LRK54_RS03335 N.D.
DNA polymerase III beta subunit (EC 2.7.7.7) LRK54_RS08480 N.D.
DNA polymerase III chi subunit (EC 2.7.7.7) LRK54_RS12370 N.D.
DNA polymerase III delta prime subunit (EC 2.7.7.7) LRK54_RS01150 N.D.
DNA polymerase III delta subunit (EC 2.7.7.7) LRK54_RS02770 N.D.
DNA polymerase III epsilon subunit (EC 2.7.7.7) LRK54_RS16780 N.D.
DNA polymerase III psi subunit (EC 2.7.7.7) No genes
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) LRK54_RS01260 N.D.
DNA polymerase III theta subunit (EC 2.7.7.7) No genes
DNA primase (EC 2.7.7.-) LRK54_RS07055 N.D.
DNA primase (EC 2.7.7.-), phage-associated No genes
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN LRK54_RS17960 -0.2
DNA replication protein DnaC No genes
DNA replication terminus site-binding protein No genes
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) LRK54_RS02185 -0.9
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) LRK54_RS02180 -0.6
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) LRK54_RS02175 -0.7
Helicase PriA essential for oriC/DnaA-independent DNA replication LRK54_RS11075 N.D.
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA LRK54_RS04910 N.D.
Holliday junction DNA helicase RuvB LRK54_RS04900 N.D.
Primosomal protein I No genes
Primosomal replication protein N No genes
Primosomal replication protein N prime prime No genes
RecA protein LRK54_RS14980 -0.4
Recombination protein RecR LRK54_RS01250 -0.1
Replicative DNA helicase (EC 3.6.1.-) LRK54_RS02530 N.D.
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) LRK54_RS00315 +0.1
Transcription-repair coupling factor LRK54_RS02040 +1.8

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