SEED Subsystem: Oxidative stress in Pseudomonas fluorescens FW300-N2E2

Experiments:

Role Gene Name octanoate (C)  
⨯
Alkyl hydroperoxide reductase subunit C-like protein Pf6N2E2_4501 +0.0
  Pf6N2E2_5586 +1.1
Catalase (EC 1.11.1.6) Pf6N2E2_1252 -0.1
  Pf6N2E2_1898 +0.1
  Pf6N2E2_2199 -0.0
  Pf6N2E2_3430 +0.2
  Pf6N2E2_4170 +0.2
  Pf6N2E2_4886 +0.3
  Pf6N2E2_5074 -0.0
  Pf6N2E2_5769 +0.2
DNA binding protein starved cells-like peroxide resistance protein No genes
Fe2+/Zn2+ uptake regulation proteins Pf6N2E2_1085 +0.1
Ferric uptake regulation protein No genes
Ferric uptake regulation protein FUR Pf6N2E2_3371 N.D.
Ferroxidase (EC 1.16.3.1) Pf6N2E2_5529 +0.2
Fumarate and nitrate reduction regulatory protein Pf6N2E2_2323 +1.4
Heme oxygenase HemO, associated with heme uptake Pf6N2E2_2903 -0.2
Hydrogen peroxide-inducible genes activator Pf6N2E2_1911 +0.2
  Pf6N2E2_3449 +0.1
  Pf6N2E2_3889 +0.1
  Pf6N2E2_4353 +1.0
Iron-binding ferritin-like antioxidant protein Pf6N2E2_5529 +0.2
Iron-responsive regulator Irr No genes
Manganese superoxide dismutase (EC 1.15.1.1) Pf6N2E2_3274 +0.0
Metallothionein No genes
Nitrite-sensitive transcriptional repressor NsrR No genes
NnrS protein involved in response to NO Pf6N2E2_714 +0.7
Non-specific DNA-binding protein Dps Pf6N2E2_5529 +0.2
Organic hydroperoxide resistance protein Pf6N2E2_2459 -0.5
  Pf6N2E2_4181 -0.8
Organic hydroperoxide resistance transcriptional regulator Pf6N2E2_2443 -0.1
  Pf6N2E2_2458 N.D.
Paraquat-inducible protein A Pf6N2E2_2139 -0.4
  Pf6N2E2_2140 +0.1
  Pf6N2E2_5181 -3.1
  Pf6N2E2_5182 -2.4
Paraquat-inducible protein B Pf6N2E2_2141 +0.1
  Pf6N2E2_5183 -3.1
Peroxidase (EC 1.11.1.7) Pf6N2E2_3430 +0.2
Peroxidase/catalase HPI (EC 1.11.1.6) No genes
Peroxide stress regulator No genes
Peroxide stress regulator PerR, FUR family No genes
Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) Pf6N2E2_3852 -0.0
Probable peroxiredoxin (EC 1.11.1.15) No genes
Redox-sensitive transcriptional activator SoxR Pf6N2E2_6074 -0.1
Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) No genes
Regulatory protein SoxS No genes
Rubrerythrin No genes
Superoxide dismutase (EC 1.15.1.1) No genes
Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) No genes
Superoxide dismutase [Fe] (EC 1.15.1.1) Pf6N2E2_2851 N.D.
Superoxide dismutase [Mn/Fe] (EC 1.15.1.1) No genes
Superoxide dismutase [Mn] (EC 1.15.1.1) No genes
Superoxide reductase (EC 1.15.1.2) No genes
Thioredoxin peroxidase 1 (EC 1.6.4.-) No genes
Transcriptional regulator, Crp/Fnr family No genes
Transcriptional regulator, FUR family No genes
Zinc uptake regulation protein ZUR Pf6N2E2_4166 N.D.
bacteriophytochrome heme oxygenase BphO Pf6N2E2_3851 -0.0
superoxide dismutase [Fe-Zn] (EC 1.15.1.1) No genes
transcriptional regulator, Crp/Fnr family Pf6N2E2_1516 -0.1
  Pf6N2E2_2714 +0.6
  Pf6N2E2_3997 +0.2
transcriptional regulator, Fur family No genes

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