SEED Subsystem: tRNA processing in Burkholderia phytofirmans PsJN

Experiments:

Role Gene Name Paraquat dichloride 0.064 mg/ml  
⨯
5-carboxymethyl uridine and 5-carboxymethyl 2-thiouridine methyltransferase No genes
Ribonuclease BN (EC 3.1.-.-) BPHYT_RS11665 -0.1
  BPHYT_RS13735 +0.1
  BPHYT_RS22100 +0.2
  BPHYT_RS26310 +0.3
Ribonuclease D (EC 3.1.26.3) No genes
Ribonuclease P protein component (EC 3.1.26.5) BPHYT_RS19845 N.D.
Ribonuclease PH (EC 2.7.7.56) BPHYT_RS15325 +1.2
Ribonuclease T (EC 3.1.13.-) No genes
Ribonuclease Z (EC 3.1.26.11) No genes
tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) No genes
tRNA pseudouridine 13 synthase (EC 4.2.1.-) No genes
tRNA pseudouridine 55 synthase (EC 4.2.1.70) No genes
tRNA pseudouridine synthase A (EC 4.2.1.70) BPHYT_RS12155 +0.2
  BPHYT_RS33885 +0.6
tRNA pseudouridine synthase B (EC 4.2.1.70) BPHYT_RS08080 +1.9
tRNA(Ile)-lysidine synthetase No genes
tRNA-i(6)A37 methylthiotransferase BPHYT_RS16535 +0.3
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) BPHYT_RS11580 N.D.
tRNAHis-5'-guanylyltransferase No genes

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