SEED Subsystem: DNA-replication in Pseudomonas fluorescens FW300-N2C3

Experiments:

Role Gene Name D-Lactate (C)  
⨯
ATP-dependent DNA helicase RecG (EC 3.6.1.-) AO356_12380 -0.8
ATP-dependent DNA helicase RecQ AO356_04050 +0.3
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA AO356_11645 N.D.
  AO356_19110 N.D.
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) AO356_18015 N.D.
DNA polymerase I (EC 2.7.7.7) AO356_11465 -1.4
DNA polymerase II (EC 2.7.7.7) AO356_01325 -0.0
DNA polymerase III alpha subunit (EC 2.7.7.7) AO356_05965 N.D.
  AO356_15515 +0.0
  AO356_21820 +0.1
DNA polymerase III beta subunit (EC 2.7.7.7) AO356_11640 N.D.
DNA polymerase III chi subunit (EC 2.7.7.7) AO356_17465 -0.0
DNA polymerase III delta prime subunit (EC 2.7.7.7) AO356_20195 N.D.
DNA polymerase III delta subunit (EC 2.7.7.7) AO356_15365 N.D.
DNA polymerase III epsilon subunit (EC 2.7.7.7) AO356_14085 +1.6
  AO356_24495 N.D.
DNA polymerase III psi subunit (EC 2.7.7.7) No genes
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) AO356_02510 N.D.
DNA polymerase III theta subunit (EC 2.7.7.7) No genes
DNA primase (EC 2.7.7.-) AO356_14270 N.D.
DNA primase (EC 2.7.7.-), phage-associated No genes
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN AO356_07510 -0.2
DNA replication protein DnaC No genes
DNA replication terminus site-binding protein No genes
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) AO356_07910 -1.6
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) AO356_07915 -0.9
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) AO356_07920 -1.0
Helicase PriA essential for oriC/DnaA-independent DNA replication AO356_09440 N.D.
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA AO356_18020 -1.3
Holliday junction DNA helicase RuvB AO356_18025 -1.5
Primosomal protein I No genes
Primosomal replication protein N No genes
Primosomal replication protein N prime prime No genes
RecA protein AO356_05670 -0.5
Recombination protein RecR AO356_02495 +0.1
Replicative DNA helicase (EC 3.6.1.-) AO356_08580 N.D.
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) AO356_06345 +0.0
Transcription-repair coupling factor AO356_02270 +0.2

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