SEED Subsystem: Queuosine-Archaeosine Biosynthesis in Sinorhizobium meliloti 1021

Experiments:

Role Gene Name Uridine (C)  
⨯
COG2047: Uncharacterized protein (ATP-grasp superfamily) No genes
Dihydroneopterin triphosphate pyrophosphohydolase No genes
Dihydroneopterin triphosphate pyrophosphohydolase type 2 No genes
GTP cyclohydrolase I (EC 3.5.4.16) type 1 SMc01005 N.D.
GTP cyclohydrolase I (EC 3.5.4.16) type 2 No genes
Glutamine amidotransferases class-II (GATase) No genes
Hydrolase (HAD superfamily) in cluster with DUF1447 No genes
Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) SM_b21277 -0.0
  SMc01105 -1.8
  SMc03175 -0.1
NADPH dependent preQ0 reductase No genes
NADPH dependent preQ0 reductase-like No genes
Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) SMc01208 +0.0
  SMc01700 -0.1
Peptidyl-prolyl cis-trans isomerase ppiB (EC 5.2.1.8) No genes
Permease of the drug/metabolite transporter (DMT) superfamily SM_b20040 -0.2
  SM_b20112 +0.1
  SM_b20716 -0.1
  SM_b20885 -0.1
  SMa1945 -0.0
  SMc00381 -0.1
  SMc00424 -0.0
  SMc00428 N.D.
  SMc00642 +0.1
  SMc00706 -0.1
  SMc01584 -0.0
  SMc01844 -0.1
  SMc01970 -0.4
  SMc02511 +0.0
Putative preQ0 transporter SMc00703 -0.1
Queuosine Biosynthesis QueC ATPase SM_b20940 +0.1
Queuosine Biosynthesis QueE Radical SAM SM_b20938 +0.0
Queuosine biosynthesis QueD, PTPS-I No genes
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB SMc01147 -0.8
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) SMc01207 -1.8
Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter No genes
Substrate-specific component STY3230 of queuosine-regulated ECF transporter No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1 No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1 like No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 2 No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 5 No genes
glutamyl-Q-tRNA synthetase SMc00735 +0.1
preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1) No genes
tRNA-guanine transglycosylase (EC 2.4.2.29) SMc01206 -2.2

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