SEED Subsystem: DNA Repair Base Excision in Pseudomonas syringae pv. syringae B728a

Experiments:

Role Gene Name KB with Nalidixic 12.5 ug/ml  
⨯
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC Psyr_3873 -0.3
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD Psyr_3245 +0.2
DNA ligase (EC 6.5.1.2) Psyr_1819 N.D.
  Psyr_4796 +0.1
DNA polymerase I (EC 2.7.7.7) Psyr_0270 +0.2
DNA polymerase II (EC 2.7.7.7) Psyr_2361 -0.1
DNA-3-methyladenine glycosylase (EC 3.2.2.20) Psyr_0013 +0.2
  Psyr_3704 -0.2
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) Psyr_3366 -0.8
  Psyr_4370 +0.1
Endonuclease III (EC 4.2.99.18) Psyr_3888 -0.2
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) Psyr_4020 +0.1
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) Psyr_4761 +0.1
Ku domain protein Psyr_3246 -0.6
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) Psyr_1298 +0.5
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 Psyr_3970 -1.6

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