SEED Subsystem: Polyhydroxybutyrate metabolism in Burkholderia phytofirmans PsJN

Experiments:

Role Gene Name L-Tryptophan (C)  
⨯
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) BPHYT_RS03225 +0.2
  BPHYT_RS06760 +0.3
  BPHYT_RS09560 +0.0
  BPHYT_RS13545 -0.4
  BPHYT_RS34155 +0.5
3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) BPHYT_RS22375 +0.2
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) BPHYT_RS22380 +0.0
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) BPHYT_RS09560 +0.0
  BPHYT_RS13545 -0.4
3-ketoacyl-CoA thiolase (EC 2.3.1.16) BPHYT_RS02230 +0.1
  BPHYT_RS09565 +0.6
Acetoacetyl-CoA reductase (EC 1.1.1.36) BPHYT_RS00860 +0.1
  BPHYT_RS09155 -0.3
  BPHYT_RS27640 -0.2
  BPHYT_RS29090 -0.1
Acetoacetyl-CoA synthetase (EC 6.2.1.16) BPHYT_RS19375 -0.0
  BPHYT_RS23420 -0.2
Acetyl-CoA acetyltransferase (EC 2.3.1.9) No genes
Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9) No genes
Butyrate-acetoacetate CoA-transferase subunit B (EC 2.8.3.9) No genes
D(-)-3-hydroxybutyrate oligomer hydrolase (EC 3.1.1.22) BPHYT_RS29700 -0.1
D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) BPHYT_RS11930 +0.3
  BPHYT_RS20955 -0.0
  BPHYT_RS35475 N.D.
D-beta-hydroxybutyrate permease BPHYT_RS34345 -0.0
Enoyl-CoA hydratase (EC 4.2.1.17) BPHYT_RS02345 -0.2
  BPHYT_RS03225 +0.2
  BPHYT_RS03235 +0.2
  BPHYT_RS03825 N.D.
  BPHYT_RS08375 N.D.
  BPHYT_RS08630 +0.2
  BPHYT_RS09560 +0.0
  BPHYT_RS10815 N.D.
  BPHYT_RS11780 N.D.
  BPHYT_RS13545 -0.4
  BPHYT_RS14830 +0.1
  BPHYT_RS25360 N.D.
  BPHYT_RS25695 N.D.
  BPHYT_RS27105 +0.2
  BPHYT_RS27895 -0.3
  BPHYT_RS28620 +0.5
  BPHYT_RS35465 -2.4
Intracellular PHB depolymerase (EC 3.1.1.-) BPHYT_RS06095 -0.4
  BPHYT_RS27800 +0.5
Poly(3-hydroxyalkanoate) depolymerase No genes
Polyhydroxyalkanoate granule-associated protein PhaF No genes
Polyhydroxyalkanoic acid synthase BPHYT_RS09145 -0.9
  BPHYT_RS27790 +0.0
Putative 3-hydroxyacyl-coa dehydrogenase No genes
Short chain fatty acids transporter No genes
polyhydroxyalkanoate granule-associated protein PhaI No genes
polyhydroxyalkanoate synthesis repressor PhaR No genes

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