SEED Subsystem: Alginate metabolism in Pseudomonas fluorescens FW300-N1B4

Experiments:

Role Gene Name D-Galactose (C)  
⨯
Alginate biosynthesis protein Alg8 Pf1N1B4_983 -0.1
Alginate biosynthesis protein AlgX Pf1N1B4_5581 N.D.
  Pf1N1B4_988 -0.0
Alginate biosynthesis transcriptional activator Pf1N1B4_3455 N.D.
Alginate lyase (EC 4.2.2.3) No genes
Alginate lyase precursor (EC 4.2.2.3) Pf1N1B4_2404 +0.1
  Pf1N1B4_989 -0.1
GDP-mannose 6-dehydrogenase (EC 1.1.1.132) Pf1N1B4_982 -0.1
Hexuronate transporter Pf1N1B4_2746 -0.1
  Pf1N1B4_397 -1.5
  Pf1N1B4_5129 +0.2
Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) Pf1N1B4_1964 -0.0
  Pf1N1B4_993 -0.1
Mannose-6-phosphate isomerase (EC 5.3.1.8) Pf1N1B4_1375 -0.1
  Pf1N1B4_4102 -0.4
  Pf1N1B4_993 -0.1
Pectin degradation protein KdgF No genes
Phosphomannomutase (EC 5.4.2.8) Pf1N1B4_2122 -0.1
  Pf1N1B4_5949 -0.1
Poly(beta-D-mannuronate) C5 epimerase precursor (EC 5.1.3.-) Pf1N1B4_987 -0.2
Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-) Pf1N1B4_5580 +0.4
  Pf1N1B4_990 +0.1
RNA polymerase sigma-H factor AlgT Pf1N1B4_3323 N.D.
alginate biosynthesis protein AlgJ Pf1N1B4_991 -0.3
alginate o-acetyltransferase AlgF Pf1N1B4_992 +0.3
outer membrane protein AlgE Pf1N1B4_986 +0.1
poly(beta-D-mannuronate) lyase (EC 4.2.2.3) No genes

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