SEED Subsystem: DNA Repair Base Excision in Cupriavidus basilensis FW507-4G11

Experiments:

Role Gene Name R2A with Cisplatin 0.001 mg/ml  
⨯
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD RR42_RS37085 -0.0
DNA ligase (EC 6.5.1.2) RR42_RS11905 N.D.
DNA polymerase I (EC 2.7.7.7) RR42_RS15050 -2.4
  RR42_RS26565 +0.5
DNA polymerase II (EC 2.7.7.7) RR42_RS09335 -0.9
DNA-3-methyladenine glycosylase (EC 3.2.2.20) RR42_RS19630 -0.0
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) RR42_RS06355 -3.6
Endonuclease III (EC 4.2.99.18) RR42_RS05970 +0.1
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) No genes
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) RR42_RS02040 +0.2
Ku domain protein RR42_RS37090 +0.2
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) RR42_RS06090 -4.3
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 RR42_RS18320 N.D.

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