SEED Subsystem: Glycine and Serine Utilization in Pseudomonas fluorescens SBW25-INTG

Experiments:

Role Gene Name Glycine betaine (C)(N); with MOPS  
⨯
2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) No genes
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) PFLU_RS24010 +0.1
  PFLU_RS28915 -1.6
Cystathionine beta-synthase (EC 4.2.1.22) PFLU_RS16620 +0.1
Cystathionine gamma-lyase (EC 4.4.1.1) PFLU_RS16625 +0.1
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) PFLU_RS04575 -0.1
  PFLU_RS07475 +0.1
  PFLU_RS11335 N.D.
  PFLU_RS16405 -0.0
  PFLU_RS17035 +0.0
  PFLU_RS18010 -0.2
  PFLU_RS19730 -0.5
  PFLU_RS28695 -0.6
D-serine dehydratase (EC 4.3.1.18) No genes
D-serine dehydratase transcriptional activator No genes
D-serine permease DsdX No genes
D-serine/D-alanine/glycine transporter PFLU_RS05475 +0.4
  PFLU_RS09900 -0.4
  PFLU_RS16465 +0.1
Glycerate kinase (EC 2.7.1.31) PFLU_RS14645 -0.1
  PFLU_RS24110 N.D.
Glycine cleavage system H protein PFLU_RS23995 +0.2
  PFLU_RS28910 +0.7
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) PFLU_RS24000 -0.6
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
L-serine dehydratase (EC 4.3.1.17) No genes
L-serine dehydratase 1 (EC 4.3.1.17) No genes
L-serine dehydratase, alpha subunit (EC 4.3.1.17) PFLU_RS05135 +0.5
  PFLU_RS24005 +0.3
  PFLU_RS27960 -1.2
L-serine dehydratase, beta subunit (EC 4.3.1.17) PFLU_RS05135 +0.5
  PFLU_RS24005 +0.3
  PFLU_RS27960 -1.2
Monoamine oxidase (1.4.3.4) No genes
Phosphoserine aminotransferase (EC 2.6.1.52) PFLU_RS08090 N.D.
Phosphoserine phosphatase (EC 3.1.3.3) PFLU_RS02490 -0.7
  PFLU_RS09990 +0.1
  PFLU_RS23380 -2.6
  PFLU_RS28555 +0.2
  PFLU_RS28655 -3.6
Serine hydroxymethyltransferase (EC 2.1.2.1) PFLU_RS26190 +0.1
  PFLU_RS26195 N.D.
  PFLU_RS27825 -3.8
Serine transporter PFLU_RS05130 +0.5
  PFLU_RS17025 +0.6
Seryl-tRNA synthetase (EC 6.1.1.11) PFLU_RS18510 N.D.
Threonine dehydratase, catabolic (EC 4.3.1.19) PFLU_RS13595 -0.0

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