SEED Subsystem: Colanic acid biosynthesis in Phocaeicola vulgatus CL09T03C04

Experiments:

Role Gene Name D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4  
⨯
Colanic acid biosynthesis acetyltransferase WcaB (EC 2.3.1.-) No genes
Colanic acid biosynthesis acetyltransferase WcaF (EC 2.3.1.-) No genes
Colanic acid biosynthesis glycosyl transferase WcaA No genes
Colanic acid biosynthesis glycosyl transferase WcaC No genes
Colanic acid biosynthesis glycosyl transferase WcaE HMPREF1058_RS17285 +0.6
Colanic acid biosynthesis glycosyl transferase WcaL No genes
Colanic acid biosynthsis UDP-glucose lipid carrier transferase WcaJ No genes
Colanic acid biosysnthesis glycosyl transferase WcaI No genes
Colanic acid biosysnthesis protein WcaK No genes
Colanic acid polymerase WcaD No genes
GDP-L-fucose synthetase (EC 1.1.1.271) HMPREF1058_RS06610 +0.4
  HMPREF1058_RS17275 -2.1
GDP-mannose 4,6-dehydratase (EC 4.2.1.47) HMPREF1058_RS06615 -0.1
  HMPREF1058_RS17280 -0.6
GDP-mannose mannosyl hydrolase (EC 3.6.1.-) No genes
Lipopolysaccharide biosynthesis protein WzxC HMPREF1058_RS03375 +0.1
  HMPREF1058_RS09705 N.D.
Low molecular weight protein-tyrosine-phosphatase Wzb (EC 3.1.3.48) No genes
Polysaccharide export lipoprotein Wza No genes
Tyrosine-protein kinase Wzc (EC 2.7.10.2) HMPREF1058_RS06680 -0.0
  HMPREF1058_RS16120 +0.2
  HMPREF1058_RS17400 -1.5

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