| Role | Gene | Name | Post-colonization (Day 12) - Cage7;Mouse1 | |
|---|
| | | ⨯ | |
| Aldehyde dehydrogenase A (EC 1.2.1.22) | No genes | | | |
| Alfa-L-rhamnosidase (EC 3.2.1.40) | BT1001 | | +0.2 | |
| | BT1013 | | -0.2 | |
| | BT2523 | | -0.0 | |
| Alternative L-rhamnose isomerase (EC 5.3.1.14) | No genes | | | |
| Glycoside hydrolase family 2, sugar binding | No genes | | | |
| L-2,4-diketo-3-deoxyrhamnonate hydrolase | No genes | | | |
| L-2-keto-3-deoxyrhamnonate (l-KDR) aldolase | No genes | | | |
| L-2-keto-3-deoxyrhamnonate-(4)-dehydrogenase | No genes | | | |
| L-lactate dehydrogenase (EC 1.1.2.3) | No genes | | | |
| L-rhamno-gamma-lactonase (EC 3.1.1.65) | No genes | | | |
| L-rhamnonate dehydratase (EC 4.2.1.90) | No genes | | | |
| L-rhamnose isomerase (EC 5.3.1.14) | BT3764 | | -0.1 | |
| L-rhamnose isomerase (EC 5.3.1.14) | BT3764 | | -0.1 | |
| L-rhamnose mutarotase | BT4177 | | -0.6 | |
| L-rhamnose operon regulatory protein RhaS | No genes | | | |
| L-rhamnose operon transcriptional activator RhaR | No genes | | | |
| L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) | No genes | | | |
| L-rhamnose-proton symporter | BT2953 | | -0.1 | |
| | BT3765 | | -0.4 | |
| Lactaldehyde dehydrogenase involved in fucose or rhamnose utilization (EC 1.2.1.22) | No genes | | | |
| Lactaldehyde reductase (EC 1.1.1.77) | BT3767 | | -0.1 | |
| Pedicted L-rhamnose permease, NCS1 Family | No genes | | | |
| Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF | BT4456 | | -0.1 | |
| Predicted L-rhamnose ABC transporter, ATP-binding component | No genes | | | |
| Predicted L-rhamnose ABC transporter, substrate-binding component | No genes | | | |
| Predicted L-rhamnose ABC transporter, transmembrane component 1 | No genes | | | |
| Predicted L-rhamnose ABC transporter, transmembrane component 2 | No genes | | | |
| Predicted L-rhamnose mutarotase | No genes | | | |
| Predicted L-rhamnose permease RhaY | No genes | | | |
| Predicted alpha-L-rhamnosidase | BT4145 | | +0.3 | |
| Predicted lactaldehyde dehydrogenase (EC 1.2.1.22) | No genes | | | |
| Predicted regulator of rhamnose oligosacchoride utilization, DeoR family | No genes | | | |
| Predicted rhamnogalacturonan lyase in rhamnose utilization cluster | BT4175 | | +0.0 | |
| Predicted rhamnogalacturonide-specific TRAP-type transporter, large transmembrane component RhiC | No genes | | | |
| Predicted rhamnogalacturonide-specific TRAP-type transporter, small transmembrane component RhiB | No genes | | | |
| Predicted rhamnogalacturonide-specific TRAP-type transporter, substrate-binding component RhiA | No genes | | | |
| Predicted rhamnose oligosaccharide ABC transporter, ATP-binding component 1 | No genes | | | |
| Predicted rhamnose oligosaccharide ABC transport system, permease component | No genes | | | |
| Predicted rhamnose oligosaccharide ABC transport system, permease component 2 | No genes | | | |
| Predicted rhamnose oligosaccharide ABC transport system, substrate-binding component | No genes | | | |
| Predicted rhamnose oligosaccharide ABC transporter, ATP-binding component 2 | No genes | | | |
| Predicted rhamnose oligosaccharide ABC transporter, permease component 1 | No genes | | | |
| Predicted rhamnose oligosaccharide ABC transporter, permease component 2 | No genes | | | |
| Predicted rhamnose oligosaccharide ABC transporter, substrate-binding component | No genes | | | |
| Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) | No genes | | | |
| Putative beta-glucuronidase | No genes | | | |
| Putative unsaturated glucuronyl hydrolase | No genes | | | |
| Rhamnogalacturonide transporter RhiT | No genes | | | |
| Rhamnogalacturonides degradation protein RhiN | BT1011 | | -0.3 | |
| | BT2921 | | -0.2 | |
| | BT3687 | | -0.6 | |
| | BT4108 | | +0.1 | |
| | BT4176 | | -0.3 | |
| Rhamnulokinase (EC 2.7.1.5) | BT3763 | | +0.1 | |
| Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) | No genes | | | |
| Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) | BT3766 | | -0.4 | |
| Transcriptional regulator of rhamnose utilization, AraC family | BT3768 | | -0.2 | |
| Transcriptional regulator of rhamnose utilization, DeoR family | No genes | | | |
| Transcriptional regulator of rhamnose utilization, GntR family | No genes | | | |
| Transcriptional regulator of rhamnose utilization, LacI family | No genes | | | |
| Transcriptional regulator of rhamnose utilization, LysR family | No genes | | | |
| rhamnogalacturonan acetylesterase | BT2254 | | +0.1 | |
| | BT2959 | | +0.4 | |
| | BT4109 | | -0.4 | |
| | BT4110 | | -0.0 | |
| | BT4150 | | -0.8 | |
| | BT4173 | | -1.4 | |