SEED Subsystem: tRNA processing in Pseudomonas fluorescens SBW25-INTG

Experiments:

Role Gene Name Ferulic Acid (C) 1.5 mM  
⨯
5-carboxymethyl uridine and 5-carboxymethyl 2-thiouridine methyltransferase No genes
Ribonuclease BN (EC 3.1.-.-) PFLU_RS23665 +0.2
Ribonuclease D (EC 3.1.26.3) PFLU_RS07465 +1.5
Ribonuclease P protein component (EC 3.1.26.5) PFLU_RS31230 N.D.
Ribonuclease PH (EC 2.7.7.56) PFLU_RS29490 +2.7
Ribonuclease T (EC 3.1.13.-) PFLU_RS05710 N.D.
Ribonuclease Z (EC 3.1.26.11) No genes
tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) No genes
tRNA pseudouridine 13 synthase (EC 4.2.1.-) PFLU_RS06410 -0.2
tRNA pseudouridine 55 synthase (EC 4.2.1.70) No genes
tRNA pseudouridine synthase A (EC 4.2.1.70) PFLU_RS05940 +0.2
  PFLU_RS20545 +0.1
tRNA pseudouridine synthase B (EC 4.2.1.70) PFLU_RS25800 +2.4
tRNA(Ile)-lysidine synthetase No genes
tRNA-i(6)A37 methylthiotransferase PFLU_RS26555 +0.5
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) PFLU_RS05285 N.D.
tRNAHis-5'-guanylyltransferase No genes

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