SEED Subsystem: tRNA processing in Pseudomonas stutzeri RCH2

Experiments:

Role Gene Name Nickel (II) chloride 0.9 mM  
⨯
5-carboxymethyl uridine and 5-carboxymethyl 2-thiouridine methyltransferase No genes
Ribonuclease BN (EC 3.1.-.-) Psest_1481 +0.1
  Psest_2881 -0.1
Ribonuclease D (EC 3.1.26.3) Psest_2995 N.D.
Ribonuclease P protein component (EC 3.1.26.5) Psest_4376 N.D.
Ribonuclease PH (EC 2.7.7.56) Psest_3813 +0.9
Ribonuclease T (EC 3.1.13.-) Psest_3124 N.D.
Ribonuclease Z (EC 3.1.26.11) Psest_1350 -0.2
tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) No genes
tRNA pseudouridine 13 synthase (EC 4.2.1.-) Psest_2811 -0.4
tRNA pseudouridine 55 synthase (EC 4.2.1.70) No genes
tRNA pseudouridine synthase A (EC 4.2.1.70) Psest_2585 -2.1
  Psest_2917 +0.0
tRNA pseudouridine synthase B (EC 4.2.1.70) Psest_0983 N.D.
tRNA(Ile)-lysidine synthetase No genes
tRNA-i(6)A37 methylthiotransferase Psest_0532 +1.4
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) Psest_1289 N.D.
tRNAHis-5'-guanylyltransferase No genes

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