SEED Subsystem: Nitrate and nitrite ammonification in Pseudomonas fluorescens FW300-N2E2

Experiments:

Role Gene Name Nitrate reduction in presence of wild-type Pseudomonas N1-B4; replicate A  
⨯
Assimilatory nitrate reductase large subunit (EC:1.7.99.4) Pf6N2E2_2380 -0.2
Cytochrome c nitrite reductase, small subunit NrfH No genes
Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly No genes
Cytochrome c-type protein NapC Pf6N2E2_1599 -0.3
Cytochrome c-type protein NrfB precursor No genes
Cytochrome c552 precursor (EC 1.7.2.2) No genes
Ferredoxin--nitrite reductase (EC 1.7.7.1) No genes
Ferredoxin-type protein NapF (periplasmic nitrate reductase) No genes
Ferredoxin-type protein NapG (periplasmic nitrate reductase) No genes
Nitrate ABC transporter, ATP-binding protein No genes
Nitrate ABC transporter, nitrate-binding protein Pf6N2E2_2374 +0.1
Nitrate ABC transporter, permease protein No genes
Nitrate reductase cytochrome c550-type subunit Pf6N2E2_1598 +0.4
Nitrate/nitrite response regulator protein Pf6N2E2_725 -3.6
Nitrate/nitrite sensor protein (EC 2.7.3.-) Pf6N2E2_726 -3.3
Nitrate/nitrite transporter Pf6N2E2_1014 -0.2
  Pf6N2E2_1042 +0.0
  Pf6N2E2_1105 +0.2
  Pf6N2E2_1664 -0.0
  Pf6N2E2_2376 -0.1
  Pf6N2E2_610 -0.1
  Pf6N2E2_727 -1.3
  Pf6N2E2_728 -2.1
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) Pf6N2E2_1114 +0.2
  Pf6N2E2_2378 +0.0
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) Pf6N2E2_1115 +0.4
  Pf6N2E2_2379 N.D.
Nitrite reductase probable [NAD(P)H] subunit (EC 1.7.1.4) No genes
Nitrite reductase probable electron transfer 4Fe-S subunit (EC 1.7.1.4) No genes
Nitrite transporter NirC No genes
Nitrite transporter from formate/nitrite family No genes
NrfC protein No genes
NrfD protein No genes
Periplasmic nitrate reductase component NapD Pf6N2E2_1596 +0.4
Periplasmic nitrate reductase component NapE Pf6N2E2_1595 N.D.
Periplasmic nitrate reductase component NapL No genes
Periplasmic nitrate reductase precursor (EC 1.7.99.4) Pf6N2E2_1597 +0.1
Polyferredoxin NapH (periplasmic nitrate reductase) No genes
Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly No genes
Respiratory nitrate reductase alpha chain (EC 1.7.99.4) Pf6N2E2_729 -4.6
Respiratory nitrate reductase beta chain (EC 1.7.99.4) Pf6N2E2_730 -3.8
Respiratory nitrate reductase delta chain (EC 1.7.99.4) Pf6N2E2_731 -3.5
Respiratory nitrate reductase gamma chain (EC 1.7.99.4) Pf6N2E2_732 -3.7
Respiratory nitrate reductase subunit, conjectural (EC 1.7.99.4) No genes
Response regulator NasT Pf6N2E2_2375 -0.1

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