SEED Subsystem: L-rhamnose utilization in Klebsiella michiganensis M5al

Experiments:

Role Gene Name rhizosphere EcoFAB sample 3; outgrowth in LB  
Aldehyde dehydrogenase A (EC 1.2.1.22) BWI76_RS13210 +0.3
Alfa-L-rhamnosidase (EC 3.2.1.40) BWI76_RS13615 -0.1
Alternative L-rhamnose isomerase (EC 5.3.1.14) No genes
Glycoside hydrolase family 2, sugar binding No genes
L-2,4-diketo-3-deoxyrhamnonate hydrolase No genes
L-2-keto-3-deoxyrhamnonate (l-KDR) aldolase No genes
L-2-keto-3-deoxyrhamnonate-(4)-dehydrogenase No genes
L-lactate dehydrogenase (EC 1.1.2.3) No genes
L-rhamno-gamma-lactonase (EC 3.1.1.65) No genes
L-rhamnonate dehydratase (EC 4.2.1.90) BWI76_RS19990 +0.1
L-rhamnose isomerase (EC 5.3.1.14) BWI76_RS00675 -0.1
L-rhamnose isomerase (EC 5.3.1.14) BWI76_RS00675 -0.1
L-rhamnose mutarotase BWI76_RS00640 +0.8
L-rhamnose operon regulatory protein RhaS BWI76_RS00690 +0.2
  BWI76_RS03785 -0.2
  BWI76_RS13620 -1.3
L-rhamnose operon transcriptional activator RhaR BWI76_RS00695 +0.4
  BWI76_RS02715 +0.2
L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) No genes
L-rhamnose-proton symporter BWI76_RS00700 -0.1
Lactaldehyde dehydrogenase involved in fucose or rhamnose utilization (EC 1.2.1.22) BWI76_RS00645 -0.0
Lactaldehyde reductase (EC 1.1.1.77) BWI76_RS22480 -0.3
Pedicted L-rhamnose permease, NCS1 Family No genes
Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF No genes
Predicted L-rhamnose ABC transporter, ATP-binding component BWI76_RS00660 +0.3
Predicted L-rhamnose ABC transporter, substrate-binding component BWI76_RS00665 +0.2
Predicted L-rhamnose ABC transporter, transmembrane component 1 BWI76_RS00650 +0.1
Predicted L-rhamnose ABC transporter, transmembrane component 2 BWI76_RS00655 +0.2
Predicted L-rhamnose mutarotase No genes
Predicted L-rhamnose permease RhaY No genes
Predicted alpha-L-rhamnosidase No genes
Predicted lactaldehyde dehydrogenase (EC 1.2.1.22) No genes
Predicted regulator of rhamnose oligosacchoride utilization, DeoR family No genes
Predicted rhamnogalacturonan lyase in rhamnose utilization cluster No genes
Predicted rhamnogalacturonide-specific TRAP-type transporter, large transmembrane component RhiC No genes
Predicted rhamnogalacturonide-specific TRAP-type transporter, small transmembrane component RhiB No genes
Predicted rhamnogalacturonide-specific TRAP-type transporter, substrate-binding component RhiA No genes
Predicted rhamnose oligosaccharide ABC transporter, ATP-binding component 1 No genes
Predicted rhamnose oligosaccharide ABC transport system, permease component No genes
Predicted rhamnose oligosaccharide ABC transport system, permease component 2 No genes
Predicted rhamnose oligosaccharide ABC transport system, substrate-binding component No genes
Predicted rhamnose oligosaccharide ABC transporter, ATP-binding component 2 No genes
Predicted rhamnose oligosaccharide ABC transporter, permease component 1 No genes
Predicted rhamnose oligosaccharide ABC transporter, permease component 2 No genes
Predicted rhamnose oligosaccharide ABC transporter, substrate-binding component No genes
Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) No genes
Putative beta-glucuronidase No genes
Putative unsaturated glucuronyl hydrolase No genes
Rhamnogalacturonide transporter RhiT BWI76_RS18220 +0.1
Rhamnogalacturonides degradation protein RhiN BWI76_RS18215 +0.1
  BWI76_RS20985 +0.6
Rhamnulokinase (EC 2.7.1.5) BWI76_RS00680 -0.0
Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) No genes
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) BWI76_RS00670 +0.0
Transcriptional regulator of rhamnose utilization, AraC family No genes
Transcriptional regulator of rhamnose utilization, DeoR family No genes
Transcriptional regulator of rhamnose utilization, GntR family No genes
Transcriptional regulator of rhamnose utilization, LacI family No genes
Transcriptional regulator of rhamnose utilization, LysR family No genes
rhamnogalacturonan acetylesterase No genes

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