SEED Subsystem: L-Arabinose utilization in Klebsiella michiganensis M5al

Experiments:

Role Gene Name rhizosphere EcoFAB sample 3; outgrowth in LB  
2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) No genes
Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55) BWI76_RS04860 -0.2
Alpha-N-arabinofuranosidase (EC 3.2.1.55) No genes
Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55) No genes
Alpha-N-arabinofuranosidase II (EC 3.2.1.55) No genes
Alpha-arabinosides ABC transport system, permease protein 1 No genes
Alpha-arabinosides ABC transport system, permease protein 2 No genes
Alpha-arabinosides ABC transport system, substrate-binding protein No genes
Alternative L-arabinose isomerase (EC 5.3.1.4) No genes
Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99) No genes
Arabinose operon protein AraL No genes
Arabinose operon regulatory protein BWI76_RS02750 +0.2
  BWI76_RS04595 +2.1
Arabinose-proton symporter BWI76_RS17580 -0.5
  BWI76_RS23425 -0.5
  BWI76_RS24055 -0.3
Arabinose-regulated TonB-dependent outer membrane receptor No genes
Hypothetical glycoside hydrolase, family 43, similar to arabinosidase No genes
Hypothetical phosphoglucomutase family hydrolase in arabinose utilization cluster No genes
L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) No genes
L-arabinolactonase (EC 3.1.1.15) BWI76_RS21760 +0.2
L-arabinose 1-dehydrogenase (EC 1.1.1.46) No genes
L-arabinose isomerase (EC 5.3.1.4) BWI76_RS04585 -0.4
L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2) BWI76_RS18245 +2.0
L-arabinose transport system permease protein (TC 3.A.1.2.2) BWI76_RS18240 +1.6
L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2) BWI76_RS18250 +2.0
L-arabinose-specific 1-epimerase (mutarotase) No genes
L-arabonate dehydratase (EC 4.2.1.25) No genes
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) BWI76_RS04580 +0.7
  BWI76_RS27115 +0.1
Possible GPH family transporter (TC 2.A.2) for arabinosides BWI76_RS04865 +0.0
Predicted L-arabinose ABC transport system, ATP-binding protein No genes
Predicted L-arabinose ABC transport system, periplasmic arabinose-binding protein No genes
Predicted L-arabinose ABC transport system, permease protein 1 No genes
Predicted L-arabinose ABC transport system, permease protein 2 No genes
Predicted L-arabinose isomerase (EC 5.3.1.4) No genes
Predicted arabinose ABC transporter, permease protein 1 No genes
Predicted arabinose ABC transporter, permease protein 2 No genes
Predicted arabinose ABC transporter, substrate binding protein No genes
Predicted glycerol-1-phosphate dehydrogenase, arabinose operon No genes
Protein AraJ precursor BWI76_RS13765 -0.7
Putative oxidoreductase in arabinose utilization cluster No genes
Ribulokinase (EC 2.7.1.16) BWI76_RS04590 +0.4
Transcriptional regulator of the arabinose operon in Shewanella, GntR family No genes
Transcriptional repressor of arabinoside utilization operon, GntR family No genes
alternative Ribulokinase (EC 2.7.1.16) No genes

Or select organism:

Or view this subsystem at the SEED (slow)