SEED Subsystem: DNA-replication in Klebsiella michiganensis M5al

Experiments:

Role Gene Name rhizosphere EcoFAB sample 3; outgrowth in LB  
⨯
ATP-dependent DNA helicase RecG (EC 3.6.1.-) BWI76_RS27440 -3.6
ATP-dependent DNA helicase RecQ BWI76_RS01245 +0.2
  BWI76_RS26230 -0.1
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA BWI76_RS00020 N.D.
  BWI76_RS20935 N.D.
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) BWI76_RS18155 N.D.
DNA polymerase I (EC 2.7.7.7) BWI76_RS00355 -1.2
  BWI76_RS22910 +0.1
DNA polymerase II (EC 2.7.7.7) BWI76_RS04575 +0.3
DNA polymerase III alpha subunit (EC 2.7.7.7) BWI76_RS05290 N.D.
DNA polymerase III beta subunit (EC 2.7.7.7) BWI76_RS00015 N.D.
DNA polymerase III chi subunit (EC 2.7.7.7) BWI76_RS03035 N.D.
DNA polymerase III delta prime subunit (EC 2.7.7.7) BWI76_RS11120 N.D.
DNA polymerase III delta subunit (EC 2.7.7.7) BWI76_RS08065 N.D.
DNA polymerase III epsilon subunit (EC 2.7.7.7) BWI76_RS05455 N.D.
DNA polymerase III psi subunit (EC 2.7.7.7) BWI76_RS04085 N.D.
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) BWI76_RS06820 N.D.
DNA polymerase III theta subunit (EC 2.7.7.7) BWI76_RS18065 +0.5
DNA primase (EC 2.7.7.-) BWI76_RS24550 N.D.
DNA primase (EC 2.7.7.-), phage-associated BWI76_RS03355 -1.9
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN BWI76_RS21560 -1.0
DNA replication protein DnaC BWI76_RS04000 N.D.
DNA replication terminus site-binding protein BWI76_RS16265 N.D.
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) BWI76_RS23225 -0.6
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) BWI76_RS23230 -0.8
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) BWI76_RS23240 -2.2
Helicase PriA essential for oriC/DnaA-independent DNA replication BWI76_RS00770 N.D.
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA BWI76_RS18150 N.D.
Holliday junction DNA helicase RuvB BWI76_RS18145 N.D.
Primosomal protein I BWI76_RS04005 N.D.
  BWI76_RS12095 +0.7
  BWI76_RS15790 +0.8
Primosomal replication protein N BWI76_RS02665 N.D.
Primosomal replication protein N prime prime BWI76_RS06805 +0.9
RecA protein BWI76_RS22180 N.D.
Recombination protein RecR BWI76_RS06830 -0.5
Replicative DNA helicase (EC 3.6.1.-) BWI76_RS01915 N.D.
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) BWI76_RS23805 -1.3
Transcription-repair coupling factor BWI76_RS11205 +0.9

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