| Role | Gene | Name | rhizosphere EcoFAB sample 3; outgrowth in LB | |
|---|
| | | ⨯ | |
| 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase (EC 1.1.1.127) | No genes | | | |
| 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) | BWI76_RS26750 | | +0.9 | |
| 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) | No genes | | | |
| 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) | BWI76_RS03430 | | +0.0 | |
| | BWI76_RS11775 | | +0.1 | |
| | BWI76_RS23430 | | +0.2 | |
| 2-keto-3-deoxygluconate permease (KDG permease) | No genes | | | |
| 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) | No genes | | | |
| 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) | No genes | | | |
| Alcohol dehydrogenase, zinc-containing | No genes | | | |
| Alpha-1,4-digalacturonate ABC transporter, permease protein 1 | No genes | | | |
| Alpha-1,4-digalacturonate ABC transporter, permease protein 2 | No genes | | | |
| Alpha-1,4-digalacturonate ABC transporter, substrate-binding protein | No genes | | | |
| Alpha-glucosidase (EC 3.2.1.20) | BWI76_RS08195 | | -0.7 | |
| | BWI76_RS09045 | | +0.2 | |
| Alpha-glucuronidase (EC 3.2.1.139) | No genes | | | |
| Altronate hydrolase (EC 4.2.1.7) | No genes | | | |
| Altronate oxidoreductase (EC 1.1.1.58) | BWI76_RS03945 | | +0.2 | |
| | BWI76_RS15180 | | +0.7 | |
| Beta-glucuronidase (EC 3.2.1.31) | No genes | | | |
| Carbohydrate-binding, CenC domain protein | No genes | | | |
| D-galactarate dehydratase (EC 4.2.1.42) | BWI76_RS24840 | | +0.2 | |
| D-mannonate oxidoreductase (EC 1.1.1.57) | BWI76_RS05645 | | -0.7 | |
| | BWI76_RS15490 | | +0.2 | |
| | BWI76_RS19755 | | +0.0 | |
| Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) | BWI76_RS00125 | | -0.2 | |
| Exopolygalacturonate lyase (EC 4.2.2.9) | BWI76_RS00175 | | +0.2 | |
| | BWI76_RS10600 | | +0.2 | |
| Fructuronate transporter GntP | No genes | | | |
| Galacturan 1,4-alpha-galacturonidase (EC 3.2.1.67) | No genes | | | |
| Glucuronide permease | No genes | | | |
| Glucuronide transport facilitator UidC | No genes | | | |
| Glucuronide transporter UidB | No genes | | | |
| Hexuronate transporter | BWI76_RS09050 | | -0.1 | |
| | BWI76_RS24735 | | +0.1 | |
| Hexuronate utilization operon transcriptional repressor ExuR | BWI76_RS24740 | | -5.9 | |
| Intracellular alpha-amylase (EC 3.2.1.1) | No genes | | | |
| Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) | No genes | | | |
| Mannonate dehydratase (EC 4.2.1.8) | BWI76_RS05650 | | +0.0 | |
| | BWI76_RS23640 | | +0.0 | |
| Novel D-mannonate dehydrogenase (EC 1.1.1.57) | No genes | | | |
| Novel D-mannonate-D-gluconate epimerase | No genes | | | |
| Novel D-tagaturonate epimerase | No genes | | | |
| Oligogalacturonate lyase (EC 4.2.2.6) | BWI76_RS23400 | | -0.3 | |
| | BWI76_RS23435 | | +0.2 | |
| Oligogalacturonate-specific porin protein KdgM | BWI76_RS10605 | | -1.4 | |
| Pectate lyase precursor (EC 4.2.2.2) | No genes | | | |
| Pectin degradation protein KdgF | BWI76_RS23375 | | +0.1 | |
| Pectin lyase (EC 4.2.2.10) | No genes | | | |
| Pectinesterase (EC 3.1.1.11) | BWI76_RS08715 | | -0.1 | |
| Polygalacturonase (EC 3.2.1.15) | BWI76_RS06020 | | -0.3 | |
| | BWI76_RS20975 | | -0.2 | |
| Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family | No genes | | | |
| Predicted D-glucuronide-specific TRAP transporter, large transmembrane component | No genes | | | |
| Predicted D-glucuronide-specific TRAP transporter, small transmembrane component | No genes | | | |
| Predicted D-glucuronide-specific TRAP transporter, substrate-binding component | No genes | | | |
| Putative methyl oligogalcturonate esterase | No genes | | | |
| Regulator of pectin and galacturonate utilization, GntR family | No genes | | | |
| Rhamnogalacturonides degradation protein RhiN | BWI76_RS18215 | | +0.1 | |
| | BWI76_RS20985 | | +0.6 | |
| Transcriptional regulator KdgR, KDG operon repressor | BWI76_RS17960 | | N.D. | |
| Transcriptional repressor UidR | No genes | | | |
| Uronate dehydrogenase (EC 1.1.1.203) | No genes | | | |
| Uronate isomerase (EC 5.3.1.12) | BWI76_RS23645 | | -0.7 | |
| | BWI76_RS24730 | | -0.2 | |
| Uronate isomerase, family BH0493 (EC 5.3.1.12) | No genes | | | |
| Uxu operon transcriptional regulator | BWI76_RS05640 | | +0.5 | |
| | BWI76_RS23340 | | -0.9 | |
| Xylan oligosaccharide ABC transporter, ATP-binding protein 1 | No genes | | | |
| Xylan oligosaccharide ABC transporter, substrate-binding component | No genes | | | |
| Xylan oligosaccharide ABC transporter, ATP-binding protein 2 | No genes | | | |
| Xylan oligosaccharide ABC transporter, permease component 1 | No genes | | | |
| Xylan oligosaccharide ABC transporter, permease component 2 | No genes | | | |