SEED Subsystem: Deoxyribose and Deoxynucleoside Catabolism in Phocaeicola vulgatus CL09T03C04

Experiments:

Role Gene Name 2-Deoxycytidine 5-monophosphate 1 mM phosphorus source  
⨯
Deoxyribonucleoside regulator DeoR (transcriptional repressor) No genes
Deoxyribose operon repressor, DeoR family No genes
Deoxyribose-phosphate aldolase (EC 4.1.2.4) HMPREF1058_RS11510 -3.4
Nucleoside permease NupC No genes
Phosphopentomutase (EC 5.4.2.7) No genes
Predicted nucleoside ABC transporter, ATP-binding component No genes
Predicted nucleoside ABC transporter, permease 1 component No genes
Predicted nucleoside ABC transporter, permease 2 component No genes
Predicted nucleoside ABC transporter, substrate-binding component No genes
Purine nucleoside phosphorylase (EC 2.4.2.1) HMPREF1058_RS05765 +1.0
Putative deoxyribonuclease YjjV HMPREF1058_RS11400 +0.2
Putative deoxyribose-specific ABC transporter, ATP-binding protein No genes
Putative deoxyribose-specific ABC transporter, permease protein No genes
Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) No genes
Ribokinase (EC 2.7.1.15) HMPREF1058_RS09490 -0.6
  HMPREF1058_RS17070 +0.1
Thymidine phosphorylase (EC 2.4.2.4) No genes

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