SEED Subsystem: Queuosine-Archaeosine Biosynthesis in Pseudomonas fluorescens FW300-N2E3

Experiments:

Role Gene Name L-Ornithine  
⨯
COG2047: Uncharacterized protein (ATP-grasp superfamily) No genes
Dihydroneopterin triphosphate pyrophosphohydolase No genes
Dihydroneopterin triphosphate pyrophosphohydolase type 2 No genes
GTP cyclohydrolase I (EC 3.5.4.16) type 1 AO353_02285 N.D.
  AO353_04960 -0.3
GTP cyclohydrolase I (EC 3.5.4.16) type 2 AO353_10125 -0.1
Glutamine amidotransferases class-II (GATase) No genes
Hydrolase (HAD superfamily) in cluster with DUF1447 No genes
Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) AO353_20845 +0.2
NADPH dependent preQ0 reductase No genes
NADPH dependent preQ0 reductase-like No genes
Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) No genes
Peptidyl-prolyl cis-trans isomerase ppiB (EC 5.2.1.8) No genes
Permease of the drug/metabolite transporter (DMT) superfamily AO353_04865 +3.3
  AO353_05760 -0.2
  AO353_06270 +0.1
  AO353_13445 -0.2
  AO353_17400 -0.3
  AO353_18175 +0.6
  AO353_18215 +0.0
  AO353_18375 -0.3
  AO353_18450 -0.6
  AO353_21475 +0.3
  AO353_22670 +0.5
  AO353_23270 -0.7
  AO353_24095 -0.1
  AO353_24285 -0.0
  AO353_26930 -0.2
  AO353_28835 +0.2
  AO353_29135 -0.5
Putative preQ0 transporter AO353_04415 +0.2
Queuosine Biosynthesis QueC ATPase AO353_03535 +0.1
  AO353_22170 -0.4
Queuosine Biosynthesis QueE Radical SAM AO353_03540 +0.6
Queuosine biosynthesis QueD, PTPS-I No genes
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB AO353_08200 +0.2
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) AO353_15785 +0.6
Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter No genes
Substrate-specific component STY3230 of queuosine-regulated ECF transporter No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1 No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1 like No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 2 No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 5 No genes
glutamyl-Q-tRNA synthetase AO353_14415 -0.3
preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1) No genes
tRNA-guanine transglycosylase (EC 2.4.2.29) AO353_15790 N.D.

Or select organism:

Or view this subsystem at the SEED (slow)