SEED Subsystem: tRNA processing in Bifidobacterium breve UCC2003

Experiments:

Role Gene Name chicken 4; day 4; diet=StandardDiet; sample=FecalPellet; coculture_with=Bacteroides thetaiotaomicron  
⨯
5-carboxymethyl uridine and 5-carboxymethyl 2-thiouridine methyltransferase No genes
Ribonuclease BN (EC 3.1.-.-) No genes
Ribonuclease D (EC 3.1.26.3) BBR_RS14490 -2.7
Ribonuclease P protein component (EC 3.1.26.5) BBR_RS20485 N.D.
Ribonuclease PH (EC 2.7.7.56) BBR_RS12405 -4.1
Ribonuclease T (EC 3.1.13.-) No genes
Ribonuclease Z (EC 3.1.26.11) No genes
tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) No genes
tRNA pseudouridine 13 synthase (EC 4.2.1.-) No genes
tRNA pseudouridine 55 synthase (EC 4.2.1.70) No genes
tRNA pseudouridine synthase A (EC 4.2.1.70) BBR_RS18795 -2.9
tRNA pseudouridine synthase B (EC 4.2.1.70) BBR_RS18750 -1.9
tRNA(Ile)-lysidine synthetase No genes
tRNA-i(6)A37 methylthiotransferase BBR_RS16570 -2.9
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) BBR_RS20205 N.D.
tRNAHis-5'-guanylyltransferase No genes

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