SEED Subsystem: Queuosine-Archaeosine Biosynthesis in Pseudomonas fluorescens SBW25-INTG

Experiments:

Role Gene Name Glucose (C) and nitrate (N); with MOPS  
⨯
COG2047: Uncharacterized protein (ATP-grasp superfamily) No genes
Dihydroneopterin triphosphate pyrophosphohydolase No genes
Dihydroneopterin triphosphate pyrophosphohydolase type 2 No genes
GTP cyclohydrolase I (EC 3.5.4.16) type 1 PFLU_RS21315 -1.0
  PFLU_RS25310 +0.1
GTP cyclohydrolase I (EC 3.5.4.16) type 2 PFLU_RS29970 -0.2
Glutamine amidotransferases class-II (GATase) No genes
Hydrolase (HAD superfamily) in cluster with DUF1447 No genes
Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) PFLU_RS20350 -0.0
NADPH dependent preQ0 reductase No genes
NADPH dependent preQ0 reductase-like No genes
Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) PFLU_RS10700 +0.1
  PFLU_RS29180 -0.0
Peptidyl-prolyl cis-trans isomerase ppiB (EC 5.2.1.8) No genes
Permease of the drug/metabolite transporter (DMT) superfamily PFLU_RS02815 -0.1
  PFLU_RS06925 +0.1
  PFLU_RS12010 -0.2
  PFLU_RS14605 +0.1
  PFLU_RS15175 +0.1
  PFLU_RS15605 +1.1
  PFLU_RS16885 -0.1
  PFLU_RS18835 +0.1
  PFLU_RS21895 +0.3
  PFLU_RS22300 -0.1
  PFLU_RS22445 -0.0
  PFLU_RS22645 -0.8
  PFLU_RS22785 -0.0
  PFLU_RS25240 +0.1
  PFLU_RS26430 -0.0
Putative preQ0 transporter PFLU_RS24610 +0.3
Queuosine Biosynthesis QueC ATPase PFLU_RS24040 +0.2
Queuosine Biosynthesis QueE Radical SAM PFLU_RS24045 +0.1
Queuosine biosynthesis QueD, PTPS-I No genes
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB PFLU_RS28405 +0.1
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) PFLU_RS24905 -0.2
Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter No genes
Substrate-specific component STY3230 of queuosine-regulated ECF transporter No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1 No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1 like No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 2 No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 5 No genes
glutamyl-Q-tRNA synthetase PFLU_RS25720 -0.2
preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1) No genes
tRNA-guanine transglycosylase (EC 2.4.2.29) PFLU_RS24900 -0.4

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