SEED Subsystem: Iron acquisition in Vibrio in Klebsiella michiganensis M5al

Experiments:

Role Gene Name Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM  
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28) No genes
2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58) No genes
Aerobactin siderophore receptor IutA BWI76_RS11185 +0.4
Amide synthase component of siderophore synthetase No genes
Bacterioferritin BWI76_RS25855 +0.5
Bacterioferritin-associated ferredoxin BWI76_RS25860 N.D.
Catechol siderophore ABC transporter, ATP-binding component No genes
Catechol siderophore ABC transporter, permease component No genes
Catechol siderophore ABC transporter, substrate-binding protein No genes
Enterobactin receptor IrgA No genes
Enterobactin receptor VctA No genes
Ferric aerobactin ABC transporter, ATPase component No genes
Ferric aerobactin ABC transporter, periplasmic substrate binding protein No genes
Ferric aerobactin ABC transporter, permease component No genes
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC BWI76_RS05130 +0.1
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD BWI76_RS05135 +0.1
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB BWI76_RS05140 +0.2
Ferric hydroxamate outer membrane receptor FhuA BWI76_RS05125 -0.1
Ferric iron ABC transporter, ATP-binding protein BWI76_RS10480 -1.6
Ferric iron ABC transporter, iron-binding protein BWI76_RS06045 +0.2
  BWI76_RS10470 -0.9
  BWI76_RS13635 +0.1
Ferric iron ABC transporter, permease protein BWI76_RS06040 +0.1
  BWI76_RS10475 -1.4
  BWI76_RS13640 +0.3
  BWI76_RS16765 -0.0
Ferric uptake regulation protein FUR BWI76_RS08265 N.D.
Ferric vibriobactin receptor ViuA No genes
Ferric vibriobactin, enterobactin transport system, ATP-binding protein (TC 3.A.1.14.6) No genes
Ferric vibriobactin, enterobactin transport system, ATP-binding protein ViuC (TC 3.A.1.14.6) No genes
Ferric vibriobactin, enterobactin transport system, permease protein VctD (TC 3.A.1.14.6) No genes
Ferric vibriobactin, enterobactin transport system, permease protein VctG (TC 3.A.1.14.6) No genes
Ferric vibriobactin, enterobactin transport system, permease protein ViuD (TC 3.A.1.14.6) No genes
Ferric vibriobactin, enterobactin transport system, permease protein ViuG (TC 3.A.1.14.6) No genes
Ferric vibriobactin, enterobactin transport system, substrate-binding protein VctP (TC 3.A.1.14.6) No genes
Ferric vibriobactin, enterobactin transport system, substrate-binding protein ViuP (TC 3.A.1.14.6) No genes
Ferric vulnibactin receptor VuuA No genes
Ferrichrome transport ATP-binding protein FhuC (TC 3.A.1.14.3) No genes
Ferrichrome transport system permease protein FhuB (TC 3.A.1.14.3) No genes
Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3) No genes
Ferrichrome-iron receptor BWI76_RS05630 -0.3
  BWI76_RS07355 +0.3
  BWI76_RS07480 +0.3
  BWI76_RS08945 +0.3
  BWI76_RS16835 +0.0
Ferrous iron transport protein A BWI76_RS26650 +0.5
Ferrous iron transport protein B BWI76_RS26645 +0.2
Ferrous iron transport protein C No genes
Hemin ABC transporter, permease protein BWI76_RS22470 +0.4
Hypothetical protein colocalized with Enterobactin receptor VctA No genes
Hypothetical protein in aerobactin uptake cluster No genes
Iron-regulated virulence regulatory protein irgB No genes
Isochorismatase (EC 3.3.2.1) of siderophore biosynthesis BWI76_RS15095 +0.0
Isochorismate pyruvate-lyase of siderophore biosynthesis No genes
Isochorismate synthase (EC 5.4.4.2) of siderophore biosynthesis No genes
Non-ribosomal peptide synthetase modules, siderophore biosynthesis No genes
Phosphopantetheinyl transferase component of siderophore synthetase (EC 2.7.8.-) No genes
Putative TonB-dependent heme receptor HasR No genes
Putative heme iron utilization protein No genes
Pyridoxamine 5'-phosphate oxidase-related putative heme iron utilization protein No genes
Regulatory small RNA involved in iron homeostasis RyhB No genes
TonB-dependent heme and hemoglobin receptor HutA No genes
TonB-dependent heme receptor HutR No genes
TonB-dependent receptor No genes
Transcriptional regulator near Vibriobactin biosynthetic gene custer No genes
Transcriptional regulator, VCA0231 ortholog No genes
Transcriptional repressor of aerobactin receptor iutR No genes
Utilization protein for unknown catechol-siderophore X No genes
Vibriobactin utilization protein ViuB No genes
Vulnibactin utilization protein VuuB No genes

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