SEED Subsystem: DNA Repair Base Excision in Ralstonia sp. UNC404CL21Col

Experiments:

Role Gene Name Ra3_1  
⨯
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC ABZR87_RS21355 +0.1
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD ABZR87_RS08115 -0.1
DNA ligase (EC 6.5.1.2) ABZR87_RS11795 N.D.
DNA polymerase I (EC 2.7.7.7) ABZR87_RS15680 -0.3
DNA polymerase II (EC 2.7.7.7) No genes
DNA-3-methyladenine glycosylase (EC 3.2.2.20) ABZR87_RS20945 +0.5
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) ABZR87_RS00895 -0.3
  ABZR87_RS10650 -0.1
Endonuclease III (EC 4.2.99.18) ABZR87_RS09915 -0.2
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) ABZR87_RS03495 -0.3
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) ABZR87_RS07015 +2.0
Ku domain protein ABZR87_RS08120 +0.2
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) ABZR87_RS10395 -0.8
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 ABZR87_RS02170 N.D.

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