SEED Subsystem: DNA-replication in Ralstonia sp. UNC404CL21Col

Experiments:

Role Gene Name Ra3_1  
⨯
ATP-dependent DNA helicase RecG (EC 3.6.1.-) ABZR87_RS01270 -0.5
ATP-dependent DNA helicase RecQ ABZR87_RS02880 -0.1
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA ABZR87_RS00925 N.D.
  ABZR87_RS05380 N.D.
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) ABZR87_RS07635 -0.2
DNA polymerase I (EC 2.7.7.7) ABZR87_RS15680 -0.3
DNA polymerase II (EC 2.7.7.7) No genes
DNA polymerase III alpha subunit (EC 2.7.7.7) ABZR87_RS15505 -0.2
DNA polymerase III beta subunit (EC 2.7.7.7) ABZR87_RS05385 N.D.
DNA polymerase III chi subunit (EC 2.7.7.7) No genes
DNA polymerase III delta prime subunit (EC 2.7.7.7) ABZR87_RS12470 N.D.
DNA polymerase III delta subunit (EC 2.7.7.7) ABZR87_RS01400 N.D.
DNA polymerase III epsilon subunit (EC 2.7.7.7) ABZR87_RS07945 +0.0
  ABZR87_RS14230 N.D.
DNA polymerase III psi subunit (EC 2.7.7.7) No genes
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) ABZR87_RS10795 N.D.
DNA polymerase III theta subunit (EC 2.7.7.7) No genes
DNA primase (EC 2.7.7.-) ABZR87_RS15610 N.D.
DNA primase (EC 2.7.7.-), phage-associated No genes
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN ABZR87_RS01065 -0.0
DNA replication protein DnaC No genes
DNA replication terminus site-binding protein No genes
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) No genes
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) No genes
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) No genes
Helicase PriA essential for oriC/DnaA-independent DNA replication ABZR87_RS03975 N.D.
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA ABZR87_RS07625 -2.1
Holliday junction DNA helicase RuvB ABZR87_RS07620 -1.4
Primosomal protein I No genes
Primosomal replication protein N ABZR87_RS11350 N.D.
Primosomal replication protein N prime prime No genes
RecA protein ABZR87_RS07965 -0.5
Recombination protein RecR ABZR87_RS10810 -0.1
Replicative DNA helicase (EC 3.6.1.-) ABZR87_RS11365 N.D.
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) ABZR87_RS10395 -0.8
Transcription-repair coupling factor ABZR87_RS13240 -1.2

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