SEED Subsystem: Lysine degradation in Pseudomonas fluorescens SBW25-INTG

Experiments:

Role Gene Name Sucrose (C) and Glycine betaine (N); with TAPS; with PEG  
⨯
5-aminopentanamidase (EC 3.5.1.30) PFLU_RS27560 -0.0
  PFLU_RS27855 -0.0
5-aminovalerate aminotransferase (EC 2.6.1.48) PFLU_RS00915 +0.1
Beta-lysine acetyltransferase (EC 2.3.1.-) No genes
Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) PFLU_RS13200 +0.0
Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) No genes
L-aminoadipate-semialdehyde dehydrogenase large subunit (EC 1.2.1.31) No genes
L-beta-lysine 5,6-aminomutase alpha subunit (EC 5.4.3.3) No genes
L-beta-lysine 5,6-aminomutase beta subunit (EC 5.4.3.3) No genes
L-lysine aminomutase regulator No genes
L-lysine permease PFLU_RS04580 -0.2
  PFLU_RS07015 +0.2
  PFLU_RS10795 -0.0
L-pipecolate dehydrogenase (EC 1.5.99.3) PFLU_RS02715 +0.1
L-pipecolate oxidase (1.5.3.7) PFLU_RS02720 +0.1
Lysine 2,3-aminomutase (EC 5.4.3.2) No genes
Lysine 2-monooxygenase (EC 1.13.12.2) PFLU_RS27555 +0.0
  PFLU_RS27845 -0.0
Lysine decarboxylase (EC 4.1.1.18) No genes
Lysine decarboxylase 2, constitutive (EC 4.1.1.18) No genes
Lysine decarboxylase, inducible (EC 4.1.1.18) PFLU_RS12930 -0.0
Lysine ketoglutarate reductase (EC 1.5.1.8) (LOR) (LKR) No genes
Lysine/cadaverine antiporter membrane protein CadB No genes
Outer membrane porin, OprD family PFLU_RS01450 -0.1
  PFLU_RS03485 +0.0
  PFLU_RS04110 +0.1
  PFLU_RS17415 -0.2
  PFLU_RS17535 +0.1
  PFLU_RS24140 +1.3
  PFLU_RS28850 +0.2
Saccharopine dehydrogenase (EC 1.5.1.9) No genes
Saccharopine dehydrogenase [NAD+, L-lysine-forming] (EC 1.5.1.7) No genes
Saccharopine dehydrogenase [NADP , L-glutamate-forming] (EC 1.5.1.10) No genes
Transcriptional activator of cad operon No genes

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