SEED Subsystem: Ribosome biogenesis bacterial in Paraburkholderia graminis OAS925

Experiments:

Role Gene Name RCH2_defined_glucose_5mM with Lumazine 5 mM  
⨯
16S rRNA processing protein RimM ABIE53_003127 N.D.
Dimethyladenosine transferase (EC 2.1.1.-) No genes
Inactive homolog of metal-dependent proteases, putative molecular chaperone No genes
LSU m3Psi1915 methyltransferase RlmH ABIE53_001541 N.D.
LSU m5C1962 methyltransferase RlmI ABIE53_000425 +0.5
RNA pseudouridylate synthase, group 1 No genes
Ribonuclease E (EC 3.1.26.12) ABIE53_000070 -0.2
  ABIE53_001343 +0.0
  ABIE53_003059 +0.5
Ribonuclease M5 (EC 3.1.26.8) No genes
Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) No genes
Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) ABIE53_003058 -1.4
Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) ABIE53_002062 +0.6
Ribosomal protein L11 methyltransferase (EC 2.1.1.-) ABIE53_003569 +0.4
Ribosomal protein S6 glutaminyl transferase No genes
Ribosomal-protein-L7p-serine acetyltransferase No genes
Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) ABIE53_002532 +0.1
Ribosomal-protein-S5p-alanine acetyltransferase No genes
Similar to ribosomal large subunit pseudouridine synthase A No genes
Similar to ribosomal large subunit pseudouridine synthase A, group 2 No genes
Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YhcT type No genes
Similar to ribosomal large subunit pseudouridine synthase D, Bacillus subtilis YjbO type No genes
Similar to ribosomal large subunit pseudouridine synthase D, CAC1266-type No genes
Similar to ribosomal large subunit pseudouridine synthase D, TTE1780-type No genes
hypothetical protein sometimes fused to ribosomal protein S6 glutaminyl transferase No genes
tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31) ABIE53_003126 N.D.

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