SEED Subsystem: TCA Cycle in Pantoea sp. MT58

Experiments:

Role Gene Name Ying_AminoAcid20 rep B; time point 3  
⨯
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) IAI47_13745 -3.3
Aconitate hydratase (EC 4.2.1.3) IAI47_09250 -0.4
Aconitate hydratase 2 (EC 4.2.1.3) IAI47_15770 N.D.
Aconitate hydratase X, predicted No genes
Aconitate hydratase large subunit (EC 4.2.1.3) No genes
Aconitate hydratase small subunit (EC 4.2.1.3) No genes
Archaeal succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) No genes
Archaeal succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) No genes
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) No genes
Citrate synthase (si) (EC 2.3.3.1) IAI47_13770 -3.5
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) No genes
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) No genes
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) IAI47_13740 -2.1
Fumarate hydratase class I (EC 4.2.1.2) No genes
Fumarate hydratase class I, aerobic (EC 4.2.1.2) IAI47_20435 -0.1
Fumarate hydratase class II (EC 4.2.1.2) IAI47_10335 -1.1
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) IAI47_11900 N.D.
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41) No genes
Malate dehydrogenase (EC 1.1.1.37) IAI47_02520 -1.9
Malate:quinone oxidoreductase (EC 1.1.5.4) IAI47_01100 +0.2
  IAI47_20405 -0.0
Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425 No genes
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) IAI47_13755 -3.0
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) IAI47_13750 -2.7
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) IAI47_13730 N.D.
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) IAI47_13735 N.D.
Transcriptional regulator of succinyl CoA synthetase operon IAI47_20010 -0.0
hypothetical protein that often co-occurs with aconitase No genes

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