SEED Subsystem: tRNA processing in Pantoea sp. MT58

Experiments:

Role Gene Name Ying_sugar7 rep C; time point 3  
⨯
5-carboxymethyl uridine and 5-carboxymethyl 2-thiouridine methyltransferase No genes
Ribonuclease BN (EC 3.1.-.-) IAI47_00475 -0.1
Ribonuclease D (EC 3.1.26.3) IAI47_08840 +0.2
Ribonuclease P protein component (EC 3.1.26.5) IAI47_18845 N.D.
Ribonuclease PH (EC 2.7.7.56) IAI47_00595 -1.3
Ribonuclease T (EC 3.1.13.-) IAI47_10775 -1.0
Ribonuclease Z (EC 3.1.26.11) IAI47_01330 +0.1
tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) No genes
tRNA pseudouridine 13 synthase (EC 4.2.1.-) IAI47_04215 -0.1
tRNA pseudouridine 55 synthase (EC 4.2.1.70) No genes
tRNA pseudouridine synthase A (EC 4.2.1.70) IAI47_06245 -0.8
tRNA pseudouridine synthase B (EC 4.2.1.70) IAI47_17015 +0.1
tRNA(Ile)-lysidine synthetase No genes
tRNA-i(6)A37 methylthiotransferase IAI47_13945 -0.1
tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) IAI47_04920 N.D.
tRNAHis-5'-guanylyltransferase No genes

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Or view this subsystem at the SEED (slow)