SEED Subsystem: Arginine and Ornithine Degradation in Enterobacter sp. TBS_079

Experiments:

Role Gene Name Putrescine (N)  
Agmatinase (EC 3.5.3.11) MPMX20_03798 +0.1
Agmatine deiminase (EC 3.5.3.12) No genes
Arginase (EC 3.5.3.1) No genes
Arginine ABC transporter, ATP-binding protein ArtP MPMX20_01507 -0.0
Arginine ABC transporter, periplasmic arginine-binding protein ArtI MPMX20_01506 -0.0
Arginine ABC transporter, periplasmic arginine-binding protein ArtJ MPMX20_01503 +0.1
Arginine ABC transporter, permease protein ArtM MPMX20_01504 -0.1
Arginine ABC transporter, permease protein ArtQ MPMX20_01505 -0.1
Arginine N-succinyltransferase (EC 2.3.1.109) MPMX20_01866 +0.7
Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) No genes
Arginine N-succinyltransferase, beta subunit (EC 2.3.1.109) No genes
Arginine decarboxylase (EC 4.1.1.19) No genes
Arginine decarboxylase, catabolic (EC 4.1.1.19) No genes
Arginine deiminase (EC 3.5.3.6) MPMX20_00549 -0.1
Arginine pathway regulatory protein ArgR, repressor of arg regulon MPMX20_00545 -0.4
  MPMX20_04141 +2.3
Arginine permease RocE No genes
Arginine utilization protein RocB No genes
Arginine utilization regulatory protein RocR No genes
Arginine/agmatine antiporter No genes
Arginine/ornithine ABC transporter, ATP-binding protein AotP No genes
Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein No genes
Arginine/ornithine ABC transporter, permease protein AotM No genes
Arginine/ornithine ABC transporter, permease protein AotQ No genes
Arginine/ornithine antiporter ArcD MPMX20_00546 +0.3
  MPMX20_01253 +0.0
  MPMX20_02029 +0.1
Biosynthetic arginine decarboxylase (EC 4.1.1.19) MPMX20_03799 +0.2
Carbamate kinase (EC 2.7.2.2) MPMX20_00548 +0.0
  MPMX20_03540 -0.2
Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) MPMX20_01702 -0.0
Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1) MPMX20_03241 -0.0
Histidine ABC transporter, histidine-binding periplasmic protein precursor HisJ (TC 3.A.1.3.1) MPMX20_03244 -0.1
Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) MPMX20_03242 -0.1
Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1) MPMX20_03243 -0.4
Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) MPMX20_02231 +0.0
  MPMX20_03245 +0.1
N-carbamoylputrescine amidase (3.5.1.53) No genes
NADP-specific glutamate dehydrogenase (EC 1.4.1.4) MPMX20_01854 +0.2
Ornithine aminotransferase (EC 2.6.1.13) No genes
Ornithine carbamoyltransferase (EC 2.1.3.3) MPMX20_00547 +0.3
  MPMX20_00556 -5.3
Ornithine cyclodeaminase (EC 4.3.1.12) No genes
Ornithine decarboxylase (EC 4.1.1.17) MPMX20_01336 -0.0
  MPMX20_03832 +0.1
Putrescine aminotransferase (EC 2.6.1.82) MPMX20_03982 -3.3
Succinylarginine dihydrolase (EC 3.5.3.23) MPMX20_01868 -0.3
Succinylglutamate desuccinylase (EC 3.5.1.96) MPMX20_01869 -0.2
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) MPMX20_01867 -0.0
Succinylornithine transaminase (EC 2.6.1.81) MPMX20_01865 -0.1
Transcriptional regulator ArcR essential for anaerobic expression of the ADI pathway, Crp/Fnr family No genes
Transcriptional regulator of catabolic arginine decarboxylase (adiA) No genes

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