SEED Subsystem: TCA Cycle in Cupriavidus basilensis FW507-4G11

Experiments:

Role Gene Name Protocatechuic Acid (C)  
⨯
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) RR42_RS12940 N.D.
Aconitate hydratase (EC 4.2.1.3) No genes
Aconitate hydratase 2 (EC 4.2.1.3) RR42_RS23515 -1.3
Aconitate hydratase X, predicted RR42_RS29680 -0.1
Aconitate hydratase large subunit (EC 4.2.1.3) No genes
Aconitate hydratase small subunit (EC 4.2.1.3) No genes
Archaeal succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) No genes
Archaeal succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) No genes
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) No genes
Citrate synthase (si) (EC 2.3.3.1) RR42_RS09325 +0.1
  RR42_RS10505 -0.0
  RR42_RS14430 N.D.
  RR42_RS32385 -0.2
  RR42_RS36245 -0.2
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) RR42_RS34380 -2.4
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) RR42_RS12930 N.D.
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) RR42_RS07380 -0.5
  RR42_RS21770 -0.7
  RR42_RS26115 -0.7
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) RR42_RS12935 N.D.
Fumarate hydratase class I (EC 4.2.1.2) No genes
Fumarate hydratase class I, aerobic (EC 4.2.1.2) RR42_RS13905 +0.8
  RR42_RS27740 -0.1
Fumarate hydratase class II (EC 4.2.1.2) RR42_RS33090 -0.2
  RR42_RS37365 -0.3
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) RR42_RS17135 +0.1
  RR42_RS22955 -0.3
  RR42_RS29535 -0.1
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41) No genes
Malate dehydrogenase (EC 1.1.1.37) RR42_RS02230 +0.3
  RR42_RS14465 N.D.
  RR42_RS29130 -0.2
Malate:quinone oxidoreductase (EC 1.1.5.4) No genes
Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425 No genes
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) RR42_RS02185 +0.2
  RR42_RS14445 N.D.
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) RR42_RS02215 -0.4
  RR42_RS14440 N.D.
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) RR42_RS03100 N.D.
  RR42_RS31380 +0.2
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) RR42_RS03095 +0.3
  RR42_RS31375 -0.2
Transcriptional regulator of succinyl CoA synthetase operon No genes
hypothetical protein that often co-occurs with aconitase No genes

Or select organism:

Or view this subsystem at the SEED (slow)