SEED Subsystem: Benzoate transport and degradation cluster in Cupriavidus basilensis FW507-4G11

Experiments:

Role Gene Name Pimelic (C)  
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) No genes
2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-) RR42_RS27850 +0.2
3-hydroxyacyl-CoA dehydrogenase (PaaH) (EC 1.1.1.157) No genes
4-hydroxybenzoyl-CoA reductase, beta subunit (EC 1.3.99.20) No genes
4-hydroxybenzoyl-CoA reductase, gamma subunit (EC 1.3.99.20) No genes
4-oxalocrotonate decarboxylase (EC 4.1.1.77) RR42_RS31850 +0.2
  RR42_RS32640 N.D.
  RR42_RS32645 -0.8
Benzoate transport related protein No genes
Benzoate transport, ATP binding protein RR42_RS07550 -0.7
Benzoate transport, ATPase component RR42_RS07545 -1.0
  RR42_RS12490 +0.5
Benzoate transport, extracellular ligand-binding receptor RR42_RS07530 -0.3
  RR42_RS12495 -0.2
Benzoate transport, inner membrane transport component No genes
Benzoate transport, inner-membrane translocator RR42_RS07535 -0.8
Benzoate transport, inner-membrane translocator precursor RR42_RS07540 -0.7
Benzoate-CoA ligase (EC 6.2.1.25) RR42_RS07520 +0.1
  RR42_RS09890 -0.0
  RR42_RS35150 +0.1
Benzoyl-CoA oxygenase component A RR42_RS07500 +0.2
  RR42_RS35120 +0.1
Benzoyl-CoA oxygenase component B RR42_RS07505 -0.1
  RR42_RS35125 +0.1
Beta-ketoadipyl CoA thiolase (EC 2.3.1.9) No genes
Hydroxybenzoyl-CoA reductase subunit No genes
Methylglutaconyl-CoA hydratase (EC 4.2.1.18) RR42_RS26900 -2.8
P-hydroxylaminobenzoate lyase RR42_RS35140 +0.5
Predicted 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase No genes
Putative Acyl-CoA thiolase No genes
Regulatory protein of benzoate catabolism RR42_RS07515 +0.3
  RR42_RS35135 -0.2
Shikimate kinase I (EC 2.7.1.71) RR42_RS19010 -2.0
  RR42_RS32495 -0.6
Shikimate kinase II (EC 2.7.1.71) No genes
benzoate degradation ring-cleavage hydrolase RR42_RS07525 +0.2
benzoyl-CoA-dihydrodiol lyase (BoxC) No genes
hydroxybenzoate permease No genes

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