SEED Subsystem: Protocatechuate branch of beta-ketoadipate pathway in Cupriavidus basilensis FW507-4G11

Experiments:

Role Gene Name adipate (C)  
⨯
3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) RR42_RS25850 +0.2
  RR42_RS32055 -0.3
3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) RR42_RS10005 +1.1
  RR42_RS22970 +0.2
  RR42_RS35925 +1.5
3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) RR42_RS10010 +1.3
  RR42_RS22965 -0.2
  RR42_RS35920 +5.5
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase RR42_RS20725 -0.2
4-carboxymuconolactone decarboxylase (EC 4.1.1.44) RR42_RS02890 -0.4
Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) RR42_RS00755 +0.2
  RR42_RS10565 +0.0
  RR42_RS10690 +0.1
  RR42_RS21850 -0.5
  RR42_RS24710 N.D.
  RR42_RS30700 +0.1
  RR42_RS32050 +0.5
Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) No genes
Pca regulon regulatory protein PcaR RR42_RS21530 -1.9
PhaK-like protein No genes
Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) RR42_RS32060 -0.2
Protocatechuate 3,4-dioxygenase beta chain (EC 1.13.11.3) RR42_RS32065 -0.4
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) RR42_RS06555 -0.6
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) RR42_RS06560 N.D.
dicarboxylic acid transporter PcaT RR42_RS21430 -1.5
  RR42_RS33875 +0.0

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