SEED Subsystem: Polyhydroxybutyrate metabolism in Cupriavidus basilensis FW507-4G11

Experiments:

Role Gene Name adipate (C)  
⨯
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) RR42_RS02510 -0.1
  RR42_RS05760 +0.0
  RR42_RS10265 -0.1
  RR42_RS11095 +2.8
  RR42_RS22630 +0.1
  RR42_RS28325 -0.1
  RR42_RS29465 -0.1
  RR42_RS31050 -0.1
  RR42_RS35270 +0.1
3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) No genes
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) RR42_RS01610 +0.1
  RR42_RS24305 +0.1
  RR42_RS33580 +0.4
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) RR42_RS10265 -0.1
  RR42_RS11095 +2.8
  RR42_RS22630 +0.1
  RR42_RS28325 -0.1
  RR42_RS29465 -0.1
  RR42_RS35270 +0.1
3-ketoacyl-CoA thiolase (EC 2.3.1.16) RR42_RS00885 +0.4
  RR42_RS11085 +0.4
  RR42_RS16595 -0.2
  RR42_RS22625 +0.1
  RR42_RS37020 -0.1
Acetoacetyl-CoA reductase (EC 1.1.1.36) RR42_RS07615 +3.6
  RR42_RS26085 -0.3
Acetoacetyl-CoA synthetase (EC 6.2.1.16) RR42_RS10085 -0.2
  RR42_RS15595 -0.1
  RR42_RS26915 +0.1
  RR42_RS29475 -0.0
  RR42_RS36095 -0.1
Acetyl-CoA acetyltransferase (EC 2.3.1.9) RR42_RS24970 +0.1
  RR42_RS28055 -0.1
Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9) No genes
Butyrate-acetoacetate CoA-transferase subunit B (EC 2.8.3.9) No genes
D(-)-3-hydroxybutyrate oligomer hydrolase (EC 3.1.1.22) RR42_RS12465 -0.2
D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) RR42_RS01235 +0.0
  RR42_RS06570 -0.8
  RR42_RS10725 N.D.
  RR42_RS10960 -0.1
D-beta-hydroxybutyrate permease RR42_RS10730 +0.0
  RR42_RS17790 +0.2
Enoyl-CoA hydratase (EC 4.2.1.17) RR42_RS00730 -0.2
  RR42_RS02510 -0.1
  RR42_RS02525 +0.4
  RR42_RS03015 -0.1
  RR42_RS04550 -0.2
  RR42_RS05755 -0.1
  RR42_RS10250 -0.5
  RR42_RS10265 -0.1
  RR42_RS10270 -0.1
  RR42_RS11095 +2.8
  RR42_RS12500 -0.1
  RR42_RS12795 -0.2
  RR42_RS13545 N.D.
  RR42_RS16175 +0.4
  RR42_RS16790 -0.3
  RR42_RS18250 +0.0
  RR42_RS19805 -0.6
  RR42_RS22630 +0.1
  RR42_RS22680 -0.0
  RR42_RS23295 -0.1
  RR42_RS23450 -0.3
  RR42_RS23710 +0.2
  RR42_RS24355 +1.8
  RR42_RS24895 +0.3
  RR42_RS25480 -0.5
  RR42_RS25525 -0.2
  RR42_RS25900 -0.3
  RR42_RS28050 N.D.
  RR42_RS28325 -0.1
  RR42_RS28330 -1.0
  RR42_RS29425 -0.1
  RR42_RS29465 -0.1
  RR42_RS29940 -0.2
  RR42_RS29945 +0.3
  RR42_RS31580 +0.0
  RR42_RS31935 -0.2
  RR42_RS31945 -0.0
  RR42_RS34175 +0.2
  RR42_RS34180 +0.1
  RR42_RS34905 -0.1
  RR42_RS35270 +0.1
  RR42_RS36495 -0.4
Intracellular PHB depolymerase (EC 3.1.1.-) RR42_RS05985 -0.2
  RR42_RS26055 +0.2
Poly(3-hydroxyalkanoate) depolymerase No genes
Polyhydroxyalkanoate granule-associated protein PhaF No genes
Polyhydroxyalkanoic acid synthase RR42_RS07605 +5.9
  RR42_RS11650 -0.0
  RR42_RS26095 +0.2
Putative 3-hydroxyacyl-coa dehydrogenase No genes
Short chain fatty acids transporter RR42_RS10710 -0.1
  RR42_RS27955 +0.2
polyhydroxyalkanoate granule-associated protein PhaI No genes
polyhydroxyalkanoate synthesis repressor PhaR No genes

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