SEED Subsystem: Calvin-Benson cycle in Paraburkholderia bryophila 376MFSha3.1

Experiments:

Role Gene Name Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days  
Fructose-1,6-bisphosphatase, GlpX type (EC 3.1.3.11) No genes
Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) H281DRAFT_01314 -0.0
  H281DRAFT_03991 N.D.
Fructose-1,6-bisphosphatase, type V, archaeal (EC 3.1.3.11) No genes
Fructose-bisphosphate aldolase class I (EC 4.1.2.13) H281DRAFT_02805 +0.3
Fructose-bisphosphate aldolase class II (EC 4.1.2.13) H281DRAFT_01311 +1.1
  H281DRAFT_04188 N.D.
NAD(P)-dependent glyceraldehyde 3-phosphate dehydrogenase archaeal (EC 1.2.1.59) No genes
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) H281DRAFT_06315 -2.0
NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) No genes
Phosphoglycerate kinase (EC 2.7.2.3) H281DRAFT_04190 N.D.
Phosphoribulokinase (EC 2.7.1.19) H281DRAFT_01313 -0.2
Phosphoribulokinase (EC 2.7.1.19) homolog, function unknown No genes
Protein CP12, regulation of Calvin cycle via association/dissociation of PRK/CP12/GAPDH complex No genes
Ribose 1,5-bisphosphate or 5-ribose-1,2-cyclic phosphate dehydrogenase No genes
Ribose 5-phosphate isomerase A (EC 5.3.1.6) H281DRAFT_00714 N.D.
Ribose 5-phosphate isomerase B (EC 5.3.1.6) No genes
Ribulose bisphosphate carboxylase (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39) H281DRAFT_01317 -0.1
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39) H281DRAFT_01316 N.D.
Ribulose-1,5-bisphosphate carboxylase, Type III (EC 4.1.1.39) No genes
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) H281DRAFT_01310 -0.0
  H281DRAFT_05717 -0.9
Sedoheptulose-1,7-bisphosphatase (EC 3.1.3.37) No genes
Transketolase (EC 2.2.1.1) H281DRAFT_01312 +0.4
  H281DRAFT_02826 +0.0
  H281DRAFT_06314 N.D.
Transketolase, C-terminal section (EC 2.2.1.1) H281DRAFT_02431 +1.7
  H281DRAFT_05502 -0.1
  H281DRAFT_06380 +1.2
Transketolase, N-terminal section (EC 2.2.1.1) H281DRAFT_02430 +1.5
  H281DRAFT_05503 +0.0
  H281DRAFT_06379 N.D.
Triosephosphate isomerase (EC 5.3.1.1) H281DRAFT_04564 N.D.

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