MetaCyc Pathway: L-lysine degradation X in Pseudomonas fluorescens FW300-N1B4

Add experiment(s):


Lysine decarboxylase:
L-lysine + H+→cadaverine + CO2 (EC 4.1.1.18)
Pf1N1B4_1136
Pf1N1B4_4600
Putrescine aminotransferase:
cadaverine + 2-oxoglutarate→5-aminopentanal + L-glutamate (EC 2.6.1.82)
No genes
Aminobutyraldehyde dehydrogenase:
5-aminopentanal + NAD+ + H2O→5-aminopentanoate + NADH + 2 H+ (EC 1.2.1.19)
Pf1N1B4_3024
Pf1N1B4_3029
Pf1N1B4_4264
5-aminovalerate transaminase:
5-aminopentanoate + 2-oxoglutarate→glutarate semialdehyde + L-glutamate (EC 2.6.1.48)
Pf1N1B4_1733
Pf1N1B4_4910
Glutarate-semialdehyde dehydrogenase:
glutarate semialdehyde + NADP+ + H2O→glutarate + NADPH + 2 H+ (EC 1.2.1.20)
Pf1N1B4_1734
Pf1N1B4_4931
Pf1N1B4_5616
Succinate--hydroxymethylglutarate CoA-transferase:
glutarate + succinyl-CoA→glutaryl-CoA + succinate (EC 2.8.3.13)
Pf1N1B4_1815

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information