MetaCyc Pathway: 2-methyl-branched fatty acid β-oxidation in Azospirillum brasilense Sp245

Add experiment(s):


Butyrate--CoA ligase:
a short-chain 2-methyl-branched fatty acid + ATP + coenzyme A→a short-chain 2-methyl fatty acyl-CoA + AMP + diphosphate (EC 6.2.1.2)
No genes
a long-chain 2-methyl fatty acyl-CoA + an oxidized electron-transfer flavoprotein + H+→a long-chain (2E)-2-methyl-2-enoyl-CoA + a reduced electron-transfer flavoprotein (EC 1.3.8.8)
No genes
Butyrate--CoA ligase:
a medium-chain 2-methyl-branched fatty acid + ATP + coenzyme A→a medium-chain 2-methyl fatty acyl-CoA + AMP + diphosphate (EC 6.2.1.2)
No genes
a short-chain 2-methyl fatty acyl-CoA + an oxidized electron-transfer flavoprotein + H+→a short-chain (2E)-2-methyl-2-enoyl-CoA + a reduced electron-transfer flavoprotein (EC 1.3.8.5)
No genes
a medium-chain 2-methyl fatty acyl-CoA + an oxidized electron-transfer flavoprotein + H+→a medium-chain (2E)-2-methyl-2-enoyl-CoA + a reduced electron-transfer flavoprotein (EC 1.3.8.7)
AZOBR_RS05755
AZOBR_RS20230
Enoyl-CoA hydratase (in reverse):
a long-chain (2E)-2-methyl-2-enoyl-CoA + H2O→a long-chain (3S)-3-hydroxy-2-methylacyl-CoA (EC 4.2.1.17)
AZOBR_RS01260
AZOBR_RS03680
AZOBR_RS07775
AZOBR_RS08460
AZOBR_RS09775
AZOBR_RS13325
AZOBR_RS15730
AZOBR_RS18155
AZOBR_RS20225
AZOBR_RS24105
AZOBR_RS24715
AZOBR_RS26270
AZOBR_RS26485
AZOBR_RS26830
AZOBR_RS27635
AZOBR_RS29210
Enoyl-CoA hydratase (in reverse):
a short-chain (2E)-2-methyl-2-enoyl-CoA + H2O→a short-chain (3S)-3-hydroxy-2-methylacyl-CoA (EC 4.2.1.17)
AZOBR_RS01260
AZOBR_RS03680
AZOBR_RS07775
AZOBR_RS08460
AZOBR_RS09775
AZOBR_RS13325
AZOBR_RS15730
AZOBR_RS18155
AZOBR_RS20225
AZOBR_RS24105
AZOBR_RS24715
AZOBR_RS26270
AZOBR_RS26485
AZOBR_RS26830
AZOBR_RS27635
AZOBR_RS29210
Enoyl-CoA hydratase (in reverse):
a medium-chain (2E)-2-methyl-2-enoyl-CoA + H2O→a medium-chain (3S)-3-hydroxy-2-methylacyl-CoA (EC 4.2.1.17)
AZOBR_RS01260
AZOBR_RS03680
AZOBR_RS07775
AZOBR_RS08460
AZOBR_RS09775
AZOBR_RS13325
AZOBR_RS15730
AZOBR_RS18155
AZOBR_RS20225
AZOBR_RS24105
AZOBR_RS24715
AZOBR_RS26270
AZOBR_RS26485
AZOBR_RS26830
AZOBR_RS27635
AZOBR_RS29210
3-hydroxyacyl-CoA dehydrogenase:
a long-chain (3S)-3-hydroxy-2-methylacyl-CoA + NAD+→a long-chain 2-methyl-3-oxoacyl-CoA + NADH + H+ (EC 1.1.1.35)
AZOBR_RS09555
AZOBR_RS20225
AZOBR_RS26110
3-hydroxy-2-methylbutyryl-CoA dehydrogenase:
a short-chain (3S)-3-hydroxy-2-methylacyl-CoA + NAD+→a short-chain 2-methyl-3-oxoacyl-CoA + NADH + H+ (EC 1.1.1.178)
No genes
3-hydroxyacyl-CoA dehydrogenase:
a medium-chain (3S)-3-hydroxy-2-methylacyl-CoA + NAD+→a medium-chain 2-methyl-3-oxoacyl-CoA + NADH + H+ (EC 1.1.1.35)
AZOBR_RS09555
AZOBR_RS20225
AZOBR_RS26110
Acetyl-CoA C-acyltransferase (in reverse):
a long-chain 2-methyl-3-oxoacyl-CoA + coenzyme A→a long-chain 2-methyl fatty acyl-CoA + propanoyl-CoA (EC 2.3.1.16)
AZOBR_RS20220
AZOBR_RS28180
AZOBR_RS30610
Acetyl-CoA C-acyltransferase (in reverse):
a short-chain 2-methyl-3-oxoacyl-CoA + coenzyme A→a short-chain 2-methyl fatty acyl-CoA + propanoyl-CoA (EC 2.3.1.16)
AZOBR_RS20220
AZOBR_RS28180
AZOBR_RS30610
Acetyl-CoA C-acyltransferase (in reverse):
a medium-chain 2-methyl-3-oxoacyl-CoA + coenzyme A→a medium-chain 2-methyl fatty acyl-CoA + propanoyl-CoA (EC 2.3.1.16)
AZOBR_RS20220
AZOBR_RS28180
AZOBR_RS30610

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information