MetaCyc Pathway: L-lysine degradation IV in Pseudomonas syringae pv. syringae B728a

Add experiment(s):


Lysine 2-monooxygenase:
L-lysine + dioxygen→5-aminopentanamide + CO2 + H2O (EC 1.13.12.2)
Psyr_4667
5-aminopentanamidase:
5-aminopentanamide + H2O→5-aminopentanoate + ammonium (EC 3.5.1.30)
Psyr_4668
5-aminovalerate transaminase:
5-aminopentanoate + 2-oxoglutarate→glutarate semialdehyde + L-glutamate (EC 2.6.1.48)
Psyr_0090
Psyr_0146
Glutarate-semialdehyde dehydrogenase:
glutarate semialdehyde + NADP+ + H2O→glutarate + NADPH + 2 H+ (EC 1.2.1.20)
Psyr_0091
Psyr_0149
Psyr_2394
Succinate--hydroxymethylglutarate CoA-transferase:
glutarate + succinyl-CoA→glutaryl-CoA + succinate (EC 2.8.3.13)
Psyr_5013

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information