MetaCyc Pathway: formaldehyde assimilation III (dihydroxyacetone cycle) in Rahnella sp. WP5

Add experiment(s):


Transketolase:
D-sedoheptulose 7-phosphate + D-glyceraldehyde 3-phosphate→D-ribose 5-phosphate + D-xylulose 5-phosphate (EC 2.2.1.1)
EX31_RS19490
EX31_RS19495
EX31_RS20285
EX31_RS21400
Ribose-5-phosphate isomerase:
D-ribose 5-phosphate→D-ribulose 5-phosphate (EC 5.3.1.6)
EX31_RS21465
Ribulose-phosphate 3-epimerase:
D-ribulose 5-phosphate→D-xylulose 5-phosphate (EC 5.1.3.1)
EX31_RS04705
Formaldehyde transketolase:
D-xylulose 5-phosphate + formaldehyde→D-glyceraldehyde 3-phosphate + dihydroxyacetone (EC 2.2.1.3)
No genes
Glycerone kinase:
dihydroxyacetone + ATP→glycerone phosphate + ADP + H+ (EC 2.7.1.29)
EX31_RS04210
Fructose-bisphosphate aldolase (in reverse):
glycerone phosphate + D-glyceraldehyde 3-phosphate→β-D-fructofuranose 1,6-bisphosphate (EC 4.1.2.13)
EX31_RS01425
EX31_RS21415
Triose-phosphate isomerase (in reverse):
glycerone phosphate→D-glyceraldehyde 3-phosphate (EC 5.3.1.1)
EX31_RS14300
Fructose-bisphosphatase:
β-D-fructofuranose 1,6-bisphosphate + H2O→β-D-fructofuranose 6-phosphate + phosphate (EC 3.1.3.11)
EX31_RS08670
EX31_RS10785
EX31_RS14275
EX31_RS23635
Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating):
D-glyceraldehyde 3-phosphate + NAD+ + phosphate→3-phospho-D-glyceroyl phosphate + NADH + H+ (EC 1.2.1.12)
EX31_RS06280
EX31_RS06915
Transketolase (in reverse):
β-D-fructofuranose 6-phosphate + D-glyceraldehyde 3-phosphate→D-xylulose 5-phosphate + D-erythrose 4-phosphate (EC 2.2.1.1)
EX31_RS19490
EX31_RS19495
EX31_RS20285
EX31_RS21400
Phosphoglycerate kinase (in reverse):
3-phospho-D-glyceroyl phosphate + ADP→3-phospho-D-glycerate + ATP (EC 2.7.2.3)
EX31_RS21410
Transaldolase (in reverse):
β-D-fructofuranose 6-phosphate + D-erythrose 4-phosphate→D-sedoheptulose 7-phosphate + D-glyceraldehyde 3-phosphate (EC 2.2.1.2)
EX31_RS03920
EX31_RS09820
EX31_RS14655
EX31_RS20280

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information