MetaCyc Pathway: 2-deoxy-D-ribose degradation II in Pseudomonas fluorescens SBW25-INTG

2-deoxy-β-D-ribopyranose + 2 an oxidized c-type cytochrome→2-deoxy-ribono-1,5-lactone + 2 a reduced c-type cytochrome + 2 H+ (EC 1.1.2.M2)

PFLU_RS11160

PFLU_RS11165

2-deoxy-ribono-1,5-lactone + H2O→2-deoxy-D-ribonate + H+

PFLU_RS07365

2-deoxy-D-ribonate + NAD+→2-deoxy-3-dehydro-D-ribonate + NADH + H+ (EC 1.1.1.M55)

PFLU_RS07355

2-deoxy-3-dehydro-D-ribonate + acetyl-CoA→acetoacetate + D-glyceroyl-CoA

PFLU_RS07360

Acetoacetate--CoA ligase: acetoacetate + ATP + coenzyme A→acetoacetyl-CoA + AMP + diphosphate (EC 6.2.1.16)

PFLU_RS12835

PFLU_RS17185

PFLU_RS18960

PFLU_RS21255

PFLU_RS23680

PFLU_RS23685

D-glyceroyl-CoA + H2O→D-glycerate + coenzyme A + H+

No genes

Acetyl-CoA C-acyltransferase (in reverse): acetoacetyl-CoA + coenzyme A→2 acetyl-CoA (EC 2.3.1.16; 2.3.1.9)

PFLU_RS03225

PFLU_RS06735

PFLU_RS07655

PFLU_RS10575

PFLU_RS14765

PFLU_RS16065

PFLU_RS17190

PFLU_RS21180

PFLU_RS22845

D-glycerate + ATP→2-phospho-D-glycerate + ADP + H+ (EC 2.7.1.165)

PFLU_RS14645

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information