| a 2,3,4-saturated fatty acid + ATP + coenzyme A→a 2,3,4-saturated fatty acyl CoA + AMP + diphosphate |
| No genes |
Acyl-CoA oxidase:
a 2,3,4-saturated fatty acyl CoA + dioxygen→a (2E)-2-enoyl-CoA + hydrogen peroxide (EC 1.3.3.6) |
| No genes |
Enoyl-CoA hydratase (in reverse):
a (2E)-2-enoyl-CoA + H2O→a 2,3,4-saturated (3S)-3-hydroxyacyl-CoA (EC 4.2.1.17) |
| HP15_1141 |
| HP15_12 |
| HP15_1232 |
| HP15_1512 |
| HP15_1737 |
| HP15_1740 |
| HP15_2575 |
| HP15_2692 |
| HP15_2717 |
| HP15_3410 |
| HP15_3941 |
| HP15_4082 |
| HP15_4094 |
| HP15_55 |
| HP15_864 |
| HP15_908 |
| HP15_909 |
3-hydroxyacyl-CoA dehydrogenase:
a 2,3,4-saturated (3S)-3-hydroxyacyl-CoA + NAD+→a 2,3,4-saturated 3-oxoacyl-CoA + NADH + H+ (EC 1.1.1.35) |
| HP15_1232 |
| HP15_1512 |
| HP15_3941 |
| HP15_48 |
Acetyl-CoA C-acyltransferase (in reverse):
a 2,3,4-saturated 3-oxoacyl-CoA + coenzyme A→a 2,3,4-saturated fatty acyl CoA + acetyl-CoA (EC 2.3.1.16) |
| HP15_1009 |
| HP15_1233 |
| HP15_1513 |
| HP15_2344 |
| HP15_2423 |
| HP15_2695 |
| HP15_2996 |
| HP15_35 |
| HP15_3943 |
| HP15_49 |
| HP15_5 |
Citrate (Si)-synthase:
acetyl-CoA + oxaloacetate + H2O→citrate + coenzyme A + H+ (EC 2.3.3.1; 2.3.3.16; 2.3.3.3) |
| HP15_1516 |
Aconitate hydratase:
citrate→cis-aconitate + H2O (EC 4.2.1.3) |
| HP15_1930 |
| HP15_2203 |
| HP15_3433 |
Aconitate hydratase:
cis-aconitate + H2O→D-threo-isocitrate (EC 4.2.1.3) |
| HP15_1930 |
| HP15_2203 |
| HP15_3433 |
Isocitrate lyase:
D-threo-isocitrate→glyoxylate + succinate (EC 4.1.3.1) |
| HP15_3234 |
Malate synthase:
acetyl-CoA + glyoxylate + H2O→(S)-malate + coenzyme A + H+ (EC 2.3.3.9) |
| HP15_2188 |
Succinate dehydrogenase (ubiquinone):
succinate[in] + an electron-transfer quinone→fumarate[in] + an electron-transfer quinol (EC 1.3.5.1) |
| HP15_1517 |
| HP15_1518 |
| HP15_1519 |
| HP15_1520 |
Fumarate hydratase (in reverse):
fumarate + H2O→(S)-malate (EC 4.2.1.2) |
| HP15_1143 |
| HP15_3132 |
Malate dehydrogenase:
(S)-malate + NAD+→oxaloacetate + NADH + H+ (EC 1.1.1.37; 1.1.1.38) |
| No genes |
Phosphoenolpyruvate carboxykinase (ATP):
oxaloacetate + ATP→phosphoenolpyruvate + ADP + CO2 (EC 4.1.1.49) |
| HP15_3498 |
Links:
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information