MetaCyc Pathway: purine ribonucleosides degradation in Shewanella oneidensis MR-1
| Adenosine deaminase: adenosine + H+ + H2O→inosine + ammonium (EC 3.5.4.4) |
| SO4731 (add) |
| Purine-nucleoside phosphorylase: inosine + phosphate→α-D-ribose-1-phosphate + hypoxanthine (EC 2.4.2.1) |
| SO0092 (deoD-1) |
| SO1221 (deoD-2) |
| SO2719 (deoD-3) |
| SO4297 |
| SO4467 |
| Purine-nucleoside phosphorylase: xanthosine + phosphate→α-D-ribose-1-phosphate + xanthine (EC 2.4.2.1) |
| SO0092 (deoD-1) |
| SO1221 (deoD-2) |
| SO2719 (deoD-3) |
| SO4297 |
| SO4467 |
| Purine-nucleoside phosphorylase: guanosine + phosphate→α-D-ribose-1-phosphate + guanine (EC 2.4.2.1; 2.4.2.15) |
| SO0092 (deoD-1) |
| SO1221 (deoD-2) |
| SO2719 (deoD-3) |
| SO4297 |
| SO4467 |
| Purine-nucleoside phosphorylase: adenosine + phosphate→α-D-ribose-1-phosphate + adenine (EC 2.4.2.1) |
| SO0092 (deoD-1) |
| SO1221 (deoD-2) |
| SO2719 (deoD-3) |
| SO4297 |
| SO4467 |
| Phosphopentomutase: α-D-ribose-1-phosphate→D-ribose 5-phosphate (EC 5.4.2.7) |
| SO1219 (deoB) |
Links:
- Pathway details at MetaCyc
- Fitness data for 7 genes
- All MetaCyc pathways for Shewanella oneidensis MR-1
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information