MetaCyc Pathway: oxalate degradation VI in Shewanella oneidensis MR-1
| Oxalate--CoA ligase: oxalate + ATP + coenzyme A→oxalyl-CoA + AMP + diphosphate (EC 6.2.1.8) |
| No genes |
| Oxalyl-CoA decarboxylase: oxalyl-CoA + H+→CO2 + formyl-CoA (EC 4.1.1.8) |
| No genes |
| Formyl-CoA hydrolase: formyl-CoA + H2O→formate + coenzyme A + H+ (EC 3.1.2.10) |
| No genes |
| formate + NAD+→CO2 + NADH (EC 1.17.1.9) |
| SO0102 (fdnH) |
| SO0103 (fdnI) |
| SO0107 (fdhD) |
| SO4503 |
Links:
- Pathway details at MetaCyc
- Fitness data for 4 genes
- All MetaCyc pathways for Shewanella oneidensis MR-1
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information