MetaCyc Pathway: guanosine nucleotides degradation III in Shewanella oneidensis MR-1
| 5'-nucleotidase: GMP + H2O→guanosine + phosphate (EC 3.1.3.5) |
| SO0177 |
| SO0372 |
| SO2001 (ushA) |
| SO2484 |
| SO3317 |
| SO3435 (surE) |
| Purine-nucleoside phosphorylase: guanosine + phosphate→guanine + α-D-ribose-1-phosphate (EC 2.4.2.1; 2.4.2.15) |
| SO0092 (deoD-1) |
| SO1221 (deoD-2) |
| SO2719 (deoD-3) |
| SO4297 |
| SO4467 |
| Guanine deaminase: guanine + H+ + H2O→xanthine + ammonium (EC 3.5.4.3) |
| No genes |
| Xanthine dehydrogenase: xanthine + NAD+ + H2O→urate + NADH + H+ (EC 1.17.1.4) |
| No genes |
Links:
- Pathway details at MetaCyc
- Fitness data for 11 genes
- All MetaCyc pathways for Shewanella oneidensis MR-1
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information